Files
Jungfraujoch/image_analysis
leonarski_fandClaude Opus 4.8 812ea94a86 rugnux: code-review fixes across the offline path
- frontend: drop the CBF/TIFF file-format menu items; the broker now rejects
  those formats, so offering them in the picker was a dead, error-producing
  choice (the enum values remain only for back-compat decode).
- RugnuxCommandLine: emit --background-trim (when it differs from the 0.10
  default) and --stills-modulation, so the viewer "copy command line" matches
  what the settings dock actually configured.
- ReindexAmbiguity: multiply the reference-CC intensity by rlp rather than
  dividing by it, matching image_scale_corr everywhere else; drop the now
  unused SafeInv helper.
- rugnux_cli: parse --refine-geometry with the hardened bounded parser instead
  of atoi (reject trailing garbage; bound N so refine_frames*50 can't overflow).
- LoadFCalcFromMtz: drop the generic "first type-F column" catch-all so a
  reference MTZ carrying only map coefficients (FWT/FC_ALL) can't silently seed
  CCref from the wrong quantity.
- WriteReflections: consolidate the duplicated MTZ Friedel/anomalous branches
  into one shared row list + column/row emission (behaviour-preserving).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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