Document the newest rc.160 work: rotation geometry post-refinement (now
default-on), the opt-in per-batch relative-B, the always-on radiation-damage
report, net-absence space-group centering ranking, and software/geometry
provenance in the merged mmCIF. Add a §7.5 for the two-pass post-refinement.
Drop the removed .hkl output from RUGNUX.md and add the new CLI options
(--rotation-no-postrefine, --relative-b, --refine-geometry, --background-trim,
--stills-modulation, --still-partiality, --spot-low-resolution,
--min-pix-per-spot, -S symbol, -r flex).
Add a plain-lysozyme (HEWL) carve-out to the no-sample-identity rule: the
field's universal standard specimen and its reference cell are allowed, while
named user datasets and every other sample stay forbidden.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
leonarski_fandClaude Opus 4.8
99617c549a
