leonarski_f
c981e1b91c
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. * jfjoch_broker: Better track time for each operation in the processing stack * jfjoch_broker: Rewrite preprocessing of diffraction images in the non-FPGA workflow to better use GPUs (work in progress) * jfjoch_broker: Remove ROI calculation in the non-FPGA workflow (work in progress) * jfjoch_viewer: Toolbar displays image number starting from 1 (instead of 0) Reviewed-on: #46
70 lines
2.2 KiB
C++
70 lines
2.2 KiB
C++
// SPDX-FileCopyrightText: 2024 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
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// SPDX-License-Identifier: GPL-3.0-only
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#ifndef JUNGFRAUJOCH_HDF5DATAFILEPLUGINMX_H
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#define JUNGFRAUJOCH_HDF5DATAFILEPLUGINMX_H
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#include "HDF5DataFilePlugin.h"
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#include "../common/AutoIncrVector.h"
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class HDF5DataFilePluginMX : public HDF5DataFilePlugin {
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const size_t max_spots;
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const bool indexing;
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// spots
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std::vector<float> spot_x;
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std::vector<float> spot_y;
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std::vector<float> spot_int;
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std::vector<int8_t> spot_indexed;
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std::vector<int8_t> spot_ice_ring;
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std::vector<int32_t> spot_h;
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std::vector<int32_t> spot_k;
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std::vector<int32_t> spot_l;
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std::vector<float> spot_dist_ewald;
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AutoIncrVector<float> beam_corr_x;
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AutoIncrVector<float> beam_corr_y;
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AutoIncrVector<uint32_t> npeaks;
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AutoIncrVector<uint32_t> strong_pixel_count;
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AutoIncrVector<uint32_t> spot_count_total;
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AutoIncrVector<uint32_t> spot_count_ice;
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AutoIncrVector<uint32_t> spot_count_indexed;
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AutoIncrVector<uint32_t> spot_count_low_res;
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// indexing
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AutoIncrVector<uint8_t> indexed;
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std::vector<float> indexed_lattice;
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// crystal
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AutoIncrVector<float> profile_radius;
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AutoIncrVector<float> mosaicity_deg;
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AutoIncrVector<float> b_factor;
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// bkg_estimate
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AutoIncrVector<float> bkg_estimate;
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// resolution_estimation
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AutoIncrVector<float> resolution_estimate;
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AutoIncrVector<uint32_t> niggli_class;
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AutoIncrVector<std::string> bravais_lattice;
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AutoIncrVector<float> spot_finding_time;
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AutoIncrVector<float> indexing_time;
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AutoIncrVector<float> refinement_time;
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AutoIncrVector<float> integration_time;
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AutoIncrVector<float> processing_time;
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AutoIncrVector<float> bragg_prediction_time;
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AutoIncrVector<float> preprocessing_time;
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AutoIncrVector<float> compression_time;
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AutoIncrVector<float> azint_time;
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public:
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explicit HDF5DataFilePluginMX(const StartMessage& msg);
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void OpenFile(HDF5File &data_file, const DataMessage& msg, size_t images_per_file) override;
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void Write(const DataMessage& msg, uint64_t image_number) override;
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void WriteFinal(HDF5File &data_file) override;
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};
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#endif //JUNGFRAUJOCH_HDF5DATAFILEPLUGINMX_H
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