leonarski_fandClaude Opus 5
cfcb84aece
rugnux gained --model - R-free and 2Fo-Fc/Fo-Fc maps against an atomic model, and with it the resolution of the enantiomorph and of a merohedral indexing ambiguity - without the page ever mentioning it. It was the only option missing; the two lists now agree in both directions, checked against the usage the binary prints. The viewer page still said results are never saved and that no Windows package exists. Both have been false for a while: the Processing panel runs full rugnux jobs on the open dataset, writes _process.h5 and the merged reflections, registers each run as a selectable view so runs can be compared, and can hand out the equivalent command line for a cluster; and the installer is published with every release. The mask menu also loads TIFFs now, and the View menu has layout presets. The writer page documented -R for the root directory, which is the back-compatibility alias for -d, and an HTTP status interface that no longer exists - status reaches the broker over the writer notification socket, and a writer is stopped with a signal. The test page pointed at .gitlab-ci.yml and at jfjoch_offline_process, which is not a binary any more; the CrystFEL fixture pointed at HDF5DatasetWriteTest, which is not either. The broker page linked ../broker/redoc-static.html, which MyST resolved by copying the 700 kB file into _downloads/ rather than using the copy already in _static. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
87 lines
2.7 KiB
Python
87 lines
2.7 KiB
Python
# Configuration file for the Sphinx documentation builder.
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#
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# For the full list of built-in configuration values, see the documentation:
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# https://www.sphinx-doc.org/en/master/usage/configuration.html
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# -- Project information -----------------------------------------------------
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# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information
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project = 'Jungfraujoch'
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copyright = '2024, Paul Scherrer Institute'
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author = 'Filip Leonarski'
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release = '1.0.0-rc.161'
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# -- General configuration ---------------------------------------------------
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# https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration
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extensions = [
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'myst_parser',
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'sphinx.ext.mathjax',
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]
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templates_path = ['_templates']
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exclude_patterns = []
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myst_enable_extensions = [
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'linkify',
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'smartquotes',
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'dollarmath',
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'amsmath',
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]
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myst_heading_anchors = 3
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# The OpenAPI Python-client pages under docs/python_client/ are generated by the
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# openapi-generator and contain header-level jumps and intra-page anchors that MyST
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# cannot resolve. We do not hand-edit generated files, so silence that noise here;
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# the hand-written docs are anchor-clean once myst_heading_anchors is set above.
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# 'config.cache' fires only because the sphinx_material theme stores a function in
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# html_context, which is harmless for our single-shot builds.
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suppress_warnings = ['myst.header', 'myst.xref_missing', 'config.cache']
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# Render LaTeX-style math nicely in HTML and support AMS-style equation numbering.
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mathjax3_config = {
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"tex": {
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"tags": "ams",
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"inlineMath": [['\\(', '\\)'], ['$', '$']],
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"displayMath": [['\\[', '\\]'], ['$$', '$$']],
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"processEscapes": True,
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}
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}
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# -- Options for HTML output -------------------------------------------------
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# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output
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html_theme = 'sphinx_material'
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html_static_path = ['../broker/redoc-static.html']
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#html_theme_options = {
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# 'sidebar_width': '300px',
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# 'page_width': 'auto'
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#}
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html_theme_options = {
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'repo_url': 'https://gitea.psi.ch/mx/jungfraujoch',
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'repo_name': 'Jungfraujoch',
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'nav_title': 'PSI Jungfraujoch',
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'html_minify': True,
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'css_minify': True,
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'globaltoc_depth': 2,
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# sphinx_material only knows github/gitlab/bitbucket; the repository is Gitea, so 'gitlab' is
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# picked purely for the icon it renders next to repo_url above.
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'repo_type': 'gitlab',
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'color_primary': 'indigo',
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'color_accent': 'lime',
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'logo_icon': ''
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}
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html_logo = 'jfjoch.png'
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html_favicon = 'jfjoch.png'
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html_sidebars = {
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"**": ["logo-text.html", "globaltoc.html", "searchbox.html"]
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}
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html_show_sourcelink = False
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