leonarski_fandClaude Opus 5.5 df47a2f74b Merge ci-fix-rc178: raw/untransformed FPGA runs start again (Bragg engine edge mask in the image's layout) ...

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_015CeEGgpKdfkCTJb3YNMJcu

2026-10-23 08:10:13 +02:00

..

azint

v1.0.0-rc.175 (#85)

2026-10-16 15:34:43 +02:00

beam_stop

ShadowFinder: back to the predicted polarization factor, in the plane the background shows

2026-10-23 06:41:10 +02:00

bragg_integration

BackgroundGain: one gain estimate for rotation and stills; the still battery no longer gives EuXFEL 152 its gain

2026-10-23 04:01:11 +02:00

bragg_prediction

Panel layout stage 2: prediction and Bragg integration through the panel table

2026-10-21 10:40:20 +02:00

dark_mask_analysis

v1.0.0-rc.148 (#58)

2026-06-08 08:30:35 +02:00

geom_refinement

stills: detector tilt refined in the geometry pre-pass, kept where held-out frames agree

2026-10-22 19:26:33 +02:00

hot_pixels

Pre-scan masks a pixel at the saturation limit on most frames, as one holding the error value

2026-10-22 17:27:43 +02:00

image_preprocessing

Panel layout stage 3: per-panel spot finding (CPU+GPU, CCL) and raster algorithms on the plane raster

2026-10-21 10:29:07 +02:00

indexing

CudaFFTPlan: one cuFFT plan per card and shape, shared by its users; rigid body transforms one grid at a time

2026-10-20 01:51:28 +02:00

lattice_search

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

roi

Dense per-pixel maps through the panel table (panel layout stage 1)

2026-10-21 10:26:30 +02:00

rotation_indexer

v1.0.0-rc.175 (#85)

2026-10-16 15:34:43 +02:00

scale_merge

StillsPartialityRefine: measure the run width only on shells with signal

2026-10-21 21:23:28 +02:00

spot_finding

Panel layout stage 3: per-panel spot finding (CPU+GPU, CCL) and raster algorithms on the plane raster

2026-10-21 10:29:07 +02:00

structure_refinement

Anomalous difference map: ANOM/PHANOM in _maps.mtz, /rugnux/map.ccp4?type=anom, a magenta mesh in the viewer

2026-10-22 20:18:51 +02:00

CMakeLists.txt

v1.0.0-rc.176 (#86)

2026-10-19 07:03:28 +02:00

IndexAndRefine.cpp

Stills given a cell: the written cell is the mean over the frames that are merged

2026-10-21 19:58:22 +02:00

IndexAndRefine.h

v1.0.0-rc.175 (#85)

2026-10-16 15:34:43 +02:00

IntegrationOutcome.h

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

LoadFCalcFromMtz.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

LoadFCalcFromMtz.h

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

MXAnalysisAfterFPGA.cpp

MXAnalysisAfterFPGA: the Bragg engine's edge mask in the image's layout, so raw / untransformed FPGA runs start again

2026-10-23 07:49:00 +02:00

MXAnalysisAfterFPGA.h

v1.0.0-rc.156 (#66)

2026-07-03 19:18:56 +02:00

MXAnalysisWithoutFPGA.cpp

Merge stills-sat into stills-easy

2026-10-22 12:46:00 +02:00

MXAnalysisWithoutFPGA.h

Serial XFEL stills inputs: readers from the files themselves, module geometry and its refinement

2026-10-20 23:30:48 +02:00

ReflectionArena.h

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

SensorAbsorption.h

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

UpdateReflectionResolution.cpp

v1.0.0-rc.167 (#77)

2026-09-09 07:25:13 +02:00

UpdateReflectionResolution.h

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

WriteReflections.cpp

v1.0.0-rc.176 (#86)

2026-10-19 07:03:28 +02:00

WriteReflections.h

v1.0.0-rc.176 (#86)

2026-10-19 07:03:28 +02:00