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This is an UNSTABLE release. It includes many experimental features, as well as many AI generated fixes. We recommend using rc.152 for production use. * rugnux: Rebrand the offline data-processing subsystem as `rugnux` and consolidate all offline analysis into the single `rugnux` binary - `jfjoch_process` is now `rugnux`, the former `jfjoch_azint` is now `rugnux --azint-only`, and `jfjoch_scale` is now `rugnux --scale` (see the new docs/NAMING.md and docs/RUGNUX.md). Scaling and merging are on by default for rotation and stills (`--no-merge` disables them), replacing the previous opt-in `-M, --scale-merge`. * rugnux: CLI fixes - default `-N` to all hardware threads, parse numeric option arguments strictly (reject non-numeric or trailing input instead of silently yielding 0), require `--wavelength > 0`, and correct the reproduced command line and `--scale` reference-cell handling. * rugnux: De-novo space-group improvements - recover genuine high symmetry and centred Bravais lattices from intensities, add an automatic CC1/2 high-resolution cutoff, and report L-test twinning statistics. * rugnux: Index weakly-diffracting low-resolution rotation data that previously failed (e.g. F-cubic crystals that diffract only to ~4 A on a detector reaching ~1.5 A). The per-frame indexing gate now measures the indexed fraction only within the resolution range the lattice actually diffracts to, so the many sub-diffraction ice/noise spots no longer make the fraction floor unreachable; the two-pass first pass tries several image-sampling schemes (spread across the whole rotation vs a consecutive wedge whose native stride keeps a reflection's rocking curve continuous, letting the FFT resolve a long axis) and keeps the one that indexes the most frames; and the de-novo space-group search no longer discards all reflections (and crashes) when every resolution shell falls below <I/sigma> = 1. * rugnux: Lower the low-resolution R-meas for strongly-diffracting rotation data - drop edge-of-sweep truncated fulls whose rocking curve was captured below `--min-captured-fraction` (default 0.7 for rotation), and report R-meas only over the observations kept by outlier rejection (matching XDS). The 0.7 default also strips the partiality-extrapolated fulls that dominate the intensity second moment on weakly-diffracting crystals, so the de-novo space-group search is no longer starved by the error-model I/sigma floor and recovers the correct symmetry (e.g. the F-cubic Benas crystals: Benas_3 -> F432, Benas_7 -> P6122, instead of P4/P1); on the reference battery every other crystal keeps its space group. * rugnux: Write the refined geometry (beam, tilt, axis) to _process.h5 and place non-standard mmCIF items under a reserved `jfjoch` prefix. * jfjoch_broker: Ordinary acquisition failures (receiver/writer/analysis problems, missed packets, writer disconnect) now return to the Idle state with an Error-severity message, so a run can be retried without an expensive re-initialisation; only failures that leave the detector in an undefined state (new JFJochCriticalException, e.g. PCIe/FPGA faults) go to the Error state and force re-initialisation. * jfjoch_broker: A synchronous /start now reports its failure to the HTTP caller instead of returning HTTP 200, and an incomplete or truncated dataset (missing packets, writer disconnect) is reported as an error rather than a "reduce frame rate" warning. * jfjoch_broker: Drop uncollected placeholder rows (number = -1) from the scan_result REST endpoint. * jfjoch_broker: Fix the inverted per-image compression ratio reported by the Lite receiver (was compressed/uncompressed instead of uncompressed/compressed). * jfjoch_broker: Bragg integration adds a quantization-noise variance floor with a box-sum fallback, and treats the type-maximum marker as an invalid pixel for unsigned image types. * jfjoch_writer: Detect file-overwrite conflicts at start for back-channel transports, and reset the writer when end-of-collection finalisation fails. * jfjoch_viewer: Preview overlays follow the geometry (resolution/ROI arcs, true beam centre, predictions, coral secondary-lattice spots, legend), add save-as-JPEG, and fix an HTTP live-follow memory leak. * Frontend: Improved aesthetics and usability, and added in-browser pixel-mask and JUNGFRAU-pedestal visualisation. * CI: Name the Windows installer jfjoch-viewer-* instead of jfjoch-*.Reviewed-on: #67 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
1014 lines
38 KiB
C++
1014 lines
38 KiB
C++
// SPDX-FileCopyrightText: 2025 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
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// SPDX-License-Identifier: GPL-3.0-only
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#include <set>
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#include "JFJochDiffractionImage.h"
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#include "../../common/DiffractionGeometry.h"
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#include "../../common/JFJochMath.h"
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#include "../../common/ROIAzimuthal.h"
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#include "../../image_analysis/bragg_integration/SystematicAbsence.h"
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#include "../widgets/ROIColorPalette.h"
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#include <QPainterPath>
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#include <QBrush>
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#include <QKeyEvent>
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#include <QGraphicsPixmapItem>
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#include <QGraphicsSimpleTextItem>
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#include <QGraphicsScene>
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#include <QWheelEvent>
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#include <QScrollBar>
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#include <QMenu>
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#include <cmath>
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#include <QMouseEvent>
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#include "JFJochSimpleImage.h"
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// Constructor
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static bool InPhiSector(float phi, float phi_min, float phi_max) {
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if (phi_min <= phi_max)
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return phi >= phi_min && phi <= phi_max;
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return phi >= phi_min || phi <= phi_max;
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}
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JFJochDiffractionImage::JFJochDiffractionImage(QWidget *parent) : JFJochImage(parent) {
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setFocusPolicy(Qt::StrongFocus); // so the Delete key reaches the view
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}
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JFJochImage::ResizeHandle JFJochDiffractionImage::hitTestBoxHandle(const QRectF &r, const QPointF &p, qreal tol) const {
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auto on = [&](qreal a, qreal b) { return std::abs(a - b) <= tol; };
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const bool L = on(p.x(), r.left()), R = on(p.x(), r.right());
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const bool T = on(p.y(), r.top()), B = on(p.y(), r.bottom());
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const bool inX = p.x() >= r.left() - tol && p.x() <= r.right() + tol;
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const bool inY = p.y() >= r.top() - tol && p.y() <= r.bottom() + tol;
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if (L && T) return ResizeHandle::TopLeft;
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if (R && T) return ResizeHandle::TopRight;
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if (L && B) return ResizeHandle::BottomLeft;
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if (R && B) return ResizeHandle::BottomRight;
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if (L && inY) return ResizeHandle::Left;
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if (R && inY) return ResizeHandle::Right;
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if (T && inX) return ResizeHandle::Top;
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if (B && inX) return ResizeHandle::Bottom;
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if (r.contains(p)) return ResizeHandle::Inside;
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return ResizeHandle::None;
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}
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void JFJochDiffractionImage::azimuthalHandles(const ROIAzimuthal &az, const DiffractionGeometry &geom,
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QPointF &inner, QPointF &outer, QPointF &phimin, QPointF &phimax) const {
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const float d2r = static_cast<float>(PI) / 180.0f;
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const float phi0 = az.GetPhiMin_deg();
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const float phi1 = az.GetPhiMax_deg();
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const float mid_phi = az.HasPhi()
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? (phi1 >= phi0 ? (phi0 + phi1) / 2.0f : std::fmod((phi0 + phi1 + 360.0f) / 2.0f, 360.0f))
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: 0.0f;
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const float r_inner = geom.ResToPxl(az.GetDMax_A());
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const float r_outer = geom.ResToPxl(az.GetDMin_A());
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const float d_mid = geom.PxlToRes((r_inner + r_outer) / 2.0f);
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auto pt = [&](float d, float phi_deg) -> QPointF {
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try {
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auto [x, y] = geom.ResPhiToPxl(d, phi_deg * d2r);
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return QPointF(x, y);
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} catch (...) {
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return QPointF(-1e9, -1e9); // off-image: never matches a handle hit-test
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}
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};
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inner = pt(az.GetDMax_A(), mid_phi);
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outer = pt(az.GetDMin_A(), mid_phi);
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phimin = pt(d_mid, phi0);
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phimax = pt(d_mid, phi1);
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}
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void JFJochDiffractionImage::mouseHover(QMouseEvent *event) {
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auto coord = mapToScene(event->pos());
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if (image && (coord.x() >= 0)
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&& (coord.x() < image->Dataset().experiment.GetXPixelsNum())
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&& (coord.y() >= 0)
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&& (coord.y() < image->Dataset().experiment.GetYPixelsNum())) {
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float res = image->Dataset().experiment.GetDiffractionGeometry().PxlToRes(coord.x(), coord.y());
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int32_t intensity = image->Image()[std::floor(coord.x()) +
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std::floor(coord.y()) * image->Dataset().experiment.GetXPixelsNum()];
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QString intensity_str = QString("I=%1").arg(intensity, 9);
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if (intensity == SATURATED_PXL_VALUE)
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intensity_str = "I=Saturated";
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else if (intensity == GAP_PXL_VALUE)
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intensity_str = " Gap ";
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else if (intensity == ERROR_PXL_VALUE)
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intensity_str = " Bad pxl ";
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emit writeStatusBar(QString("x=%1 y=%2 %3 d=%4 Å")
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.arg(coord.x(), 0, 'f', 1)
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.arg(coord.y(), 0, 'f', 1)
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.arg(intensity_str)
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.arg(res, 0, 'f', 2));
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// Update hovered resolution text without rebuilding the whole overlay
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hover_resolution = res;
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DrawResolutionText();
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} else {
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emit writeStatusBar("");
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// Clear hover resolution text when outside image
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if (std::isfinite(hover_resolution)) {
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hover_resolution = NAN;
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DrawResolutionText();
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}
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}
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}
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void JFJochDiffractionImage::LoadImageInternal() {
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if (!image)
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return;
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W = image->Dataset().experiment.GetXPixelsNum();
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H = image->Dataset().experiment.GetYPixelsNum();
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image_fp.resize(W*H);
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auto img = image->Image();
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// Fill the QImage with pixel data from the array
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for (int pxl = 0; pxl < W * H; pxl++) {
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auto val = img[pxl];
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if (val == GAP_PXL_VALUE)
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image_fp[pxl] = NAN;
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else if (val == ERROR_PXL_VALUE)
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image_fp[pxl] = -INFINITY;
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else if (val == SATURATED_PXL_VALUE)
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image_fp[pxl] = INFINITY;
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else
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image_fp[pxl] = static_cast<float>(val);
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}
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}
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void JFJochDiffractionImage::DrawSpots() {
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// Compute current visible area in scene coordinates
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const QRectF visibleRect = mapToScene(viewport()->geometry()).boundingRect();
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for (const auto &s: image->ImageData().spots) {
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// Skip reflections outside the viewport
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if (!visibleRect.contains(QPointF{s.x, s.y}))
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continue;
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const qreal desired_half_px = 8.0;
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const qreal spot_size = desired_half_px / std::sqrt(std::max(0.0001, scale_factor));
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QColor pen_color = spot_color;
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if (s.indexed)
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pen_color = (s.lattice >= 1) ? second_lattice_color : feature_color;
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else if (highlight_ice_rings && s.ice_ring)
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pen_color = ice_ring_color;
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QPen pen(pen_color, 3);
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pen.setCosmetic(true);
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auto *rect = scene()->addRect(s.x - spot_size + 0.5,
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s.y - spot_size + 0.5,
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2 * spot_size,
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2 * spot_size,
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pen);
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addOverlayItem(rect);
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}
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}
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void JFJochDiffractionImage::DrawPredictions() {
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QFont font("Arial", 2); // Font for pixel value text
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font.setPixelSize(2); // This will render very small text (1-pixel high).
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const qreal desired_half_px = 8.0;
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const qreal spot_size = desired_half_px / std::sqrt(std::max(0.0001, scale_factor));
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QColor pen_color = prediction_color;
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QPen pen(pen_color, 3);
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pen.setCosmetic(true);
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// Compute current visible area in scene coordinates
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const QRectF visibleRect = mapToScene(viewport()->geometry()).boundingRect();
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// In space-group search mode the centering-absent reflections are integrated (to confirm the
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// centering), but they are not real predictions - keep them out of the overlay.
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const char centering = image->ImageData().lattice_type.has_value()
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? image->ImageData().lattice_type->centering : 'P';
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for (const auto &s: image->ImageData().reflections) {
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if (systematic_absence(s.h, s.k, s.l, centering))
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continue;
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// Skip reflections outside the viewport
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if (!visibleRect.contains(QPointF{s.predicted_x, s.predicted_y}))
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continue;
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auto *ellipse = scene()->addEllipse(s.predicted_x - spot_size + 0.5f,
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s.predicted_y - spot_size + 0.5f,
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2.0f * spot_size,
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2.0f * spot_size,
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pen);
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addOverlayItem(ellipse);
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// When zoomed in enough, draw "h k l" above the box
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if (scale_factor >= 10.0) {
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// Format label
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QString label = QString("%1, %2, %3").arg(s.h).arg(s.k).arg(s.l);
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// Position slightly above the top side of the box
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const qreal text_x = s.predicted_x - 5.5f;
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const qreal text_y = s.predicted_y - 10.0f;
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// Use QGraphicsSimpleTextItem for much better performance
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auto *textItem = new QGraphicsSimpleTextItem(label);
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textItem->setFont(font);
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textItem->setBrush(pen_color);
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textItem->setPos(text_x, text_y);
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scene()->addItem(textItem);
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addOverlayItem(textItem);
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}
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}
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}
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void JFJochDiffractionImage::DrawResolutionRings() {
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if (ring_mode == RingMode::None)
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return;
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// Get the visible area in the scene coordinates
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QRectF visibleRect = mapToScene(viewport()->geometry()).boundingRect();
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int startX = std::max(0, static_cast<int>(std::floor(visibleRect.left())));
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int endX = std::min(static_cast<int>(image->Dataset().experiment.GetXPixelsNum()),
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static_cast<int>(std::ceil(visibleRect.right())));
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int startY = std::max(0, static_cast<int>(std::floor(visibleRect.top())));
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int endY = std::min(static_cast<int>(image->Dataset().experiment.GetYPixelsNum()),
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static_cast<int>(std::ceil(visibleRect.bottom())));
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auto geom = image->Dataset().experiment.GetDiffractionGeometry();
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QColor ring_color = feature_color;
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if (ring_mode == RingMode::IceRings) {
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ring_color = ice_ring_color;
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res_ring = QVector<float>{ICE_RING_RES_A.begin(), ICE_RING_RES_A.end()};
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} else if (ring_mode == RingMode::Auto) {
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float radius_x_0 = geom.GetBeamX_pxl() - startX;
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float radius_x_1 = endX - geom.GetBeamX_pxl();
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float radius_x = std::max(radius_x_0, radius_x_1);
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float radius_y_0 = geom.GetBeamY_pxl() - startY;
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float radius_y_1 = endY - geom.GetBeamY_pxl();
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float radius_y = std::max(radius_y_0, radius_y_1);
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float radius = std::min(radius_x, radius_y);
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if (radius_x <= 0)
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radius = radius_y;
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if (radius_y <= 0)
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radius = radius_x;
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if (radius > 0)
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res_ring = {
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geom.PxlToRes(radius / 2.0f),
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geom.PxlToRes(radius / 1.02f)
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};
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else
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res_ring = {};
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} else if (ring_mode == RingMode::Estimation) {
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if (image
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&& image->ImageData().resolution_estimate
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&& std::isfinite(image->ImageData().resolution_estimate.value())
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&& image->ImageData().resolution_estimate.value() > 0.0)
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res_ring = {*image->ImageData().resolution_estimate};
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else
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res_ring = {};
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}
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if (res_ring.empty())
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return;
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QPen pen(ring_color, 5);
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pen.setCosmetic(true);
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QVector<qreal> dashPattern = {10, 15};
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pen.setDashPattern(dashPattern);
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float phi_offset = 0;
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float res1 = geom.PxlToRes(0,0);
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float res2 = geom.PxlToRes(image->Dataset().experiment.GetXPixelsNum(),0);
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float res3 = geom.PxlToRes(image->Dataset().experiment.GetXPixelsNum(),image->Dataset().experiment.GetYPixelsNum());
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float res4 = geom.PxlToRes(0,image->Dataset().experiment.GetYPixelsNum());
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float min_res = std::min({res1, res2, res3, res4});
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for (const auto &d: res_ring) {
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if (d < min_res)
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continue;
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// Trace the constant-d contour through the geometry - a circle on an untilted detector,
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// a conic on a tilted one - the same way an azimuthal ROI arc is drawn, instead of
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// approximating it with an axis-aligned bounding-box ellipse. ResPhiToPxl throws when d is
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// too high for the wavelength, and returns NaN where the contour leaves the detector plane.
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QPainterPath path;
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bool started = false;
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bool valid = true;
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constexpr int steps = 360;
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for (int i = 0; i <= steps; i++) {
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const float phi = 2.0f * static_cast<float>(PI) * static_cast<float>(i) / static_cast<float>(steps);
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try {
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auto [x, y] = geom.ResPhiToPxl(d, phi);
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if (!std::isfinite(x) || !std::isfinite(y)) {
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started = false; // break the subpath where the ring leaves the detector
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continue;
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}
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if (!started) { path.moveTo(x, y); started = true; }
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else path.lineTo(x, y);
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} catch (...) {
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valid = false;
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break;
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}
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}
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if (!valid || path.isEmpty())
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continue;
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addOverlayItem(scene()->addPath(path, pen));
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// Place the "d Å" label at the first cardinal azimuth (staggered per ring) that is visible.
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bool have_label = false;
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QPointF label_pos;
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for (float base : {0.0f, static_cast<float>(PI) / 2.0f,
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static_cast<float>(PI), 3.0f * static_cast<float>(PI) / 2.0f}) {
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try {
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auto [x, y] = geom.ResPhiToPxl(d, phi_offset + base);
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QPointF p(x, y);
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if (std::isfinite(x) && std::isfinite(y) && visibleRect.contains(p)) {
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label_pos = p;
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have_label = true;
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break;
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}
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} catch (...) {
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break;
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}
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}
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if (have_label) {
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QFont font("Arial", 16);
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const qreal f = std::clamp(scale_factor, 0.5, 50.0);
|
|
font.setPointSizeF(16.0 / sqrt(f)); // base 12pt around scale_factor ~10
|
|
|
|
auto *textItem = new QGraphicsSimpleTextItem(
|
|
QString("%1 Å").arg(QString::number(d, 'f', 2)));
|
|
textItem->setFont(font);
|
|
textItem->setBrush(ring_color);
|
|
textItem->setPos(label_pos);
|
|
scene()->addItem(textItem);
|
|
addOverlayItem(textItem);
|
|
}
|
|
phi_offset += 4.0 / 180.0 * PI;
|
|
}
|
|
}
|
|
|
|
void JFJochDiffractionImage::DrawBeamCenter() {
|
|
auto geom = image->Dataset().experiment.GetDiffractionGeometry();
|
|
|
|
auto [beam_x, beam_y] = geom.GetDirectBeam_pxl();
|
|
DrawCross(beam_x, beam_y, 25, 5, 2);
|
|
}
|
|
|
|
void JFJochDiffractionImage::DrawTopPixels() {
|
|
int i = 0;
|
|
for (const auto& p : image->GetTopPixels()) {
|
|
if (i >= show_highest_pixels)
|
|
break;
|
|
|
|
const int32_t idx = p.second;
|
|
DrawCross(idx % image->Dataset().experiment.GetXPixelsNum() + 0.5,
|
|
idx / image->Dataset().experiment.GetXPixelsNum() + 0.5, 15, 3);
|
|
i++;
|
|
}
|
|
}
|
|
|
|
|
|
void JFJochDiffractionImage::addCustomOverlay() {
|
|
DrawResolutionRings();
|
|
DrawROIs();
|
|
DrawTopPixels();
|
|
|
|
DrawBeamCenter();
|
|
if (show_spots)
|
|
DrawSpots();
|
|
if (show_predictions)
|
|
DrawPredictions();
|
|
if (show_saturation)
|
|
DrawSaturation();
|
|
|
|
DrawResolutionText();
|
|
}
|
|
|
|
void JFJochDiffractionImage::DrawROIs() {
|
|
if (!image)
|
|
return;
|
|
|
|
const auto &rois = image->Dataset().experiment.ROI().GetROIDefinition();
|
|
auto geom = image->Dataset().experiment.GetDiffractionGeometry();
|
|
|
|
// Distinct colours per ROI (shared with the ROI-list swatches via ROIAnnotationColor); loaded
|
|
// ROIs use solid lines (the interactively drawn scratch ROI keeps its dashed feature_color).
|
|
// TODO: align this palette with the ROI colours in the bottom-panel plots.
|
|
int color_index = 0;
|
|
|
|
auto fill_brush = [&](const QColor &c) {
|
|
return show_roi_fill ? QBrush(QColor(c.red(), c.green(), c.blue(), 60)) : QBrush(Qt::NoBrush);
|
|
};
|
|
auto draw_handle = [&](const QPointF &p, const QColor &c) {
|
|
const qreal s = 4.0 / std::sqrt(std::max(1e-4, scale_factor));
|
|
addOverlayItem(scene()->addRect(QRectF(p.x() - s, p.y() - s, 2 * s, 2 * s), QPen(c, 1), QBrush(c)));
|
|
};
|
|
|
|
for (const auto &b : rois.boxes) {
|
|
QColor c = ROIAnnotationColor(color_index++);
|
|
const bool selected = (QString::fromStdString(b.GetName()) == selected_roi_);
|
|
const bool editing = b.GetName() == edit_name_.toStdString()
|
|
&& (roi_edit_ == RoiEdit::MoveBox || roi_edit_ == RoiEdit::ResizeBox);
|
|
QPen pen(c, selected ? 3 : 2);
|
|
pen.setCosmetic(true);
|
|
if (selected) pen.setStyle(Qt::DashLine); // highlight the editable ROI
|
|
const QRectF rect = editing ? edit_box_
|
|
: QRectF(b.GetXMin(), b.GetYMin(), b.GetWidth(), b.GetHeight());
|
|
addOverlayItem(scene()->addRect(rect, pen, fill_brush(c)));
|
|
AddROILabel(b.GetName(), c, rect.left(), rect.top());
|
|
if (selected) {
|
|
draw_handle(rect.topLeft(), c); draw_handle(rect.topRight(), c);
|
|
draw_handle(rect.bottomLeft(), c); draw_handle(rect.bottomRight(), c);
|
|
draw_handle({rect.center().x(), rect.top()}, c);
|
|
draw_handle({rect.center().x(), rect.bottom()}, c);
|
|
draw_handle({rect.left(), rect.center().y()}, c);
|
|
draw_handle({rect.right(), rect.center().y()}, c);
|
|
}
|
|
}
|
|
|
|
for (const auto &c_roi : rois.circles) {
|
|
QColor c = ROIAnnotationColor(color_index++);
|
|
const bool selected = (QString::fromStdString(c_roi.GetName()) == selected_roi_);
|
|
const bool editing = c_roi.GetName() == edit_name_.toStdString()
|
|
&& (roi_edit_ == RoiEdit::MoveCircle || roi_edit_ == RoiEdit::ResizeCircle);
|
|
QPen pen(c, selected ? 3 : 2);
|
|
pen.setCosmetic(true);
|
|
if (selected) pen.setStyle(Qt::DashLine);
|
|
const QPointF center = editing ? edit_center_ : QPointF(c_roi.GetX(), c_roi.GetY());
|
|
const double r = editing ? edit_radius_ : c_roi.GetRadius_pxl();
|
|
addOverlayItem(scene()->addEllipse(center.x() - r, center.y() - r, 2 * r, 2 * r, pen, fill_brush(c)));
|
|
AddROILabel(c_roi.GetName(), c, center.x(), center.y());
|
|
if (selected) {
|
|
draw_handle({center.x() + r, center.y()}, c);
|
|
draw_handle({center.x() - r, center.y()}, c);
|
|
draw_handle({center.x(), center.y() + r}, c);
|
|
draw_handle({center.x(), center.y() - r}, c);
|
|
}
|
|
}
|
|
|
|
for (const auto &az_committed : rois.azimuthal) {
|
|
QColor c = ROIAnnotationColor(color_index++);
|
|
const bool selected = (QString::fromStdString(az_committed.GetName()) == selected_roi_);
|
|
const bool editing = az_committed.GetName() == edit_name_.toStdString()
|
|
&& (roi_edit_ == RoiEdit::AzimInner || roi_edit_ == RoiEdit::AzimOuter
|
|
|| roi_edit_ == RoiEdit::RotatePhiMin || roi_edit_ == RoiEdit::RotatePhiMax);
|
|
const ROIAzimuthal az = editing
|
|
? (edit_has_phi_ ? ROIAzimuthal(az_committed.GetName(), edit_d_min_, edit_d_max_, edit_phi_min_, edit_phi_max_)
|
|
: ROIAzimuthal(az_committed.GetName(), edit_d_min_, edit_d_max_))
|
|
: az_committed;
|
|
DrawAzimuthalROI(az, c, geom);
|
|
if (selected) {
|
|
QPointF inner, outer, pmin, pmax;
|
|
azimuthalHandles(az, geom, inner, outer, pmin, pmax);
|
|
draw_handle(inner, c);
|
|
draw_handle(outer, c);
|
|
if (az.HasPhi()) {
|
|
draw_handle(pmin, c);
|
|
draw_handle(pmax, c);
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
void JFJochDiffractionImage::AddROILabel(const std::string &name, const QColor &color, float px, float py) {
|
|
if (!show_roi_labels)
|
|
return;
|
|
|
|
// Just the name; per-ROI statistics are shown in the side-panel ROI list.
|
|
auto *text = scene()->addText(QString::fromStdString(name));
|
|
text->setDefaultTextColor(color);
|
|
text->setFlag(QGraphicsItem::ItemIgnoresTransformations); // constant on-screen size
|
|
text->setPos(px, py);
|
|
addOverlayItem(text);
|
|
}
|
|
|
|
void JFJochDiffractionImage::DrawAzimuthalROI(const ROIAzimuthal &az, const QColor &color,
|
|
const DiffractionGeometry &geom) {
|
|
const bool selected = (QString::fromStdString(az.GetName()) == selected_roi_);
|
|
QPen pen(color, selected ? 3 : 2); pen.setCosmetic(true);
|
|
if (selected) pen.setStyle(Qt::DashLine);
|
|
QBrush brush = show_roi_fill ? QBrush(QColor(color.red(), color.green(), color.blue(), 60))
|
|
: QBrush(Qt::NoBrush);
|
|
|
|
const float d_inner = az.GetDMax_A(); // larger d -> smaller radius
|
|
const float d_outer = az.GetDMin_A();
|
|
auto deg2rad = [](float d) { return d * static_cast<float>(PI) / 180.0f; };
|
|
|
|
// Sample the boundary through the geometry so the wedge matches the ROI footprint.
|
|
// ResPhiToPxl throws when the resolution is too high for the wavelength; skip such ROIs.
|
|
// move_to_start == true begins a new subpath (no connecting line); false continues
|
|
// the current one (used for the radial edge between a sector's outer and inner arc).
|
|
auto add_arc = [&](QPainterPath &path, float d, float phi_a, float phi_b, int steps, bool move_to_start) -> bool {
|
|
for (int i = 0; i <= steps; i++) {
|
|
float phi = phi_a + (phi_b - phi_a) * static_cast<float>(i) / static_cast<float>(steps);
|
|
try {
|
|
auto [px, py] = geom.ResPhiToPxl(d, phi);
|
|
if (move_to_start && i == 0)
|
|
path.moveTo(px, py);
|
|
else
|
|
path.lineTo(px, py);
|
|
} catch (...) { return false; }
|
|
}
|
|
return true;
|
|
};
|
|
|
|
QPainterPath path;
|
|
if (az.HasPhi()) {
|
|
float phi0 = deg2rad(az.GetPhiMin_deg());
|
|
float phi1 = deg2rad(az.GetPhiMax_deg());
|
|
if (phi1 < phi0) phi1 += 2.0f * static_cast<float>(PI); // unwrap the sector
|
|
int steps = std::max(8, static_cast<int>((phi1 - phi0) * 180.0f / static_cast<float>(PI) / 2.0f));
|
|
if (!add_arc(path, d_outer, phi0, phi1, steps, true)) return; // outer arc
|
|
if (!add_arc(path, d_inner, phi1, phi0, steps, false)) return; // inner arc; radial edges close it
|
|
path.closeSubpath();
|
|
} else {
|
|
path.setFillRule(Qt::OddEvenFill); // annulus: two concentric rings
|
|
const float two_pi = 2.0f * static_cast<float>(PI);
|
|
if (!add_arc(path, d_outer, 0, two_pi, 180, true)) return;
|
|
path.closeSubpath();
|
|
if (!add_arc(path, d_inner, 0, two_pi, 180, true)) return;
|
|
path.closeSubpath();
|
|
}
|
|
|
|
addOverlayItem(scene()->addPath(path, pen, brush));
|
|
|
|
if (show_roi_labels) {
|
|
try {
|
|
auto [px, py] = geom.ResPhiToPxl(d_outer, az.HasPhi() ? deg2rad(az.GetPhiMin_deg()) : 0.0f);
|
|
AddROILabel(az.GetName(), color, px, py);
|
|
} catch (...) {}
|
|
}
|
|
}
|
|
|
|
void JFJochDiffractionImage::showROILabels(bool input) {
|
|
show_roi_labels = input;
|
|
updateOverlay();
|
|
}
|
|
|
|
void JFJochDiffractionImage::showROIFill(bool input) {
|
|
show_roi_fill = input;
|
|
updateOverlay();
|
|
}
|
|
|
|
void JFJochDiffractionImage::setSelectedROI(QString name) {
|
|
selected_roi_ = name;
|
|
updateOverlay();
|
|
}
|
|
|
|
bool JFJochDiffractionImage::roiEditPress(const QPointF &scenePos) {
|
|
if (!image)
|
|
return false;
|
|
|
|
const auto &rois = image->Dataset().experiment.ROI().GetROIDefinition();
|
|
auto geom = image->Dataset().experiment.GetDiffractionGeometry();
|
|
const qreal tol = 6.0 / std::sqrt(std::max(1e-4, scale_factor));
|
|
|
|
auto start = [&](const std::string &name) {
|
|
edit_name_ = QString::fromStdString(name);
|
|
selected_roi_ = edit_name_;
|
|
move_last_ = scenePos;
|
|
emit roiSelected(edit_name_);
|
|
setCursor(Qt::ClosedHandCursor);
|
|
};
|
|
|
|
// Box: corners/edges resize, interior moves.
|
|
for (const auto &b : rois.boxes) {
|
|
const QRectF r(QPointF(b.GetXMin(), b.GetYMin()), QPointF(b.GetXMax(), b.GetYMax()));
|
|
const ResizeHandle h = hitTestBoxHandle(r, scenePos, tol);
|
|
if (h == ResizeHandle::None)
|
|
continue;
|
|
start(b.GetName());
|
|
edit_box_ = r;
|
|
if (h == ResizeHandle::Inside) {
|
|
roi_edit_ = RoiEdit::MoveBox;
|
|
} else {
|
|
roi_edit_ = RoiEdit::ResizeBox;
|
|
box_handle_ = h;
|
|
}
|
|
return true;
|
|
}
|
|
|
|
// Circle: perimeter resizes, interior moves.
|
|
for (const auto &c : rois.circles) {
|
|
const QPointF center(c.GetX(), c.GetY());
|
|
const double dist = QLineF(center, scenePos).length();
|
|
if (dist > c.GetRadius_pxl() + tol)
|
|
continue;
|
|
start(c.GetName());
|
|
edit_center_ = center;
|
|
edit_radius_ = c.GetRadius_pxl();
|
|
roi_edit_ = (std::abs(dist - c.GetRadius_pxl()) <= tol) ? RoiEdit::ResizeCircle : RoiEdit::MoveCircle;
|
|
return true;
|
|
}
|
|
|
|
// Azimuthal: grab one of the discrete handles to resize Q/d (inner/outer arc) or
|
|
// rotate a phi edge. Larger tolerance than the thin arcs would give.
|
|
const qreal tol_h = 9.0 / std::sqrt(std::max(1e-4, scale_factor));
|
|
for (const auto &az : rois.azimuthal) {
|
|
QPointF inner, outer, pmin, pmax;
|
|
azimuthalHandles(az, geom, inner, outer, pmin, pmax);
|
|
auto grab = [&](const QPointF &h) { return QLineF(h, scenePos).length() <= tol_h; };
|
|
|
|
RoiEdit mode = RoiEdit::None;
|
|
if (grab(inner)) mode = RoiEdit::AzimInner;
|
|
else if (grab(outer)) mode = RoiEdit::AzimOuter;
|
|
else if (az.HasPhi() && grab(pmin)) mode = RoiEdit::RotatePhiMin;
|
|
else if (az.HasPhi() && grab(pmax)) mode = RoiEdit::RotatePhiMax;
|
|
if (mode == RoiEdit::None)
|
|
continue;
|
|
|
|
start(az.GetName());
|
|
edit_d_min_ = az.GetDMin_A();
|
|
edit_d_max_ = az.GetDMax_A();
|
|
edit_has_phi_ = az.HasPhi();
|
|
edit_phi_min_ = az.GetPhiMin_deg();
|
|
edit_phi_max_ = az.GetPhiMax_deg();
|
|
roi_edit_ = mode;
|
|
return true;
|
|
}
|
|
|
|
// Inside an azimuthal ROI but not on a handle: select it and let the base pan
|
|
// (these ROIs are large and should not capture the panning gesture).
|
|
for (const auto &az : rois.azimuthal) {
|
|
const auto [bx, by] = geom.GetDirectBeam_pxl();
|
|
const double cursor_r = QLineF(QPointF(bx, by), scenePos).length();
|
|
const float phi = geom.Phi_rad(scenePos.x(), scenePos.y()) * 180.0f / static_cast<float>(PI);
|
|
if (cursor_r < geom.ResToPxl(az.GetDMax_A()) || cursor_r > geom.ResToPxl(az.GetDMin_A()))
|
|
continue;
|
|
if (az.HasPhi() && !InPhiSector(phi, az.GetPhiMin_deg(), az.GetPhiMax_deg()))
|
|
continue;
|
|
selected_roi_ = QString::fromStdString(az.GetName());
|
|
emit roiSelected(selected_roi_);
|
|
break;
|
|
}
|
|
return false;
|
|
}
|
|
|
|
void JFJochDiffractionImage::roiEditMove(const QPointF &scenePos) {
|
|
if (!image)
|
|
return;
|
|
auto geom = image->Dataset().experiment.GetDiffractionGeometry();
|
|
const auto [bx, by] = geom.GetDirectBeam_pxl();
|
|
const float cursor_r = QLineF(QPointF(bx, by), scenePos).length();
|
|
|
|
switch (roi_edit_) {
|
|
case RoiEdit::MoveBox:
|
|
edit_box_.translate(scenePos - move_last_);
|
|
move_last_ = scenePos;
|
|
break;
|
|
case RoiEdit::ResizeBox: {
|
|
QRectF r = edit_box_;
|
|
switch (box_handle_) {
|
|
case ResizeHandle::Left: r.setLeft(scenePos.x()); break;
|
|
case ResizeHandle::Right: r.setRight(scenePos.x()); break;
|
|
case ResizeHandle::Top: r.setTop(scenePos.y()); break;
|
|
case ResizeHandle::Bottom: r.setBottom(scenePos.y()); break;
|
|
case ResizeHandle::TopLeft: r.setTopLeft(scenePos); break;
|
|
case ResizeHandle::TopRight: r.setTopRight(scenePos); break;
|
|
case ResizeHandle::BottomLeft: r.setBottomLeft(scenePos); break;
|
|
case ResizeHandle::BottomRight: r.setBottomRight(scenePos); break;
|
|
default: break;
|
|
}
|
|
edit_box_ = r.normalized();
|
|
break;
|
|
}
|
|
case RoiEdit::MoveCircle:
|
|
edit_center_ += (scenePos - move_last_);
|
|
move_last_ = scenePos;
|
|
break;
|
|
case RoiEdit::ResizeCircle:
|
|
edit_radius_ = std::max(1.0, QLineF(edit_center_, scenePos).length());
|
|
break;
|
|
case RoiEdit::AzimInner:
|
|
edit_d_max_ = geom.PxlToRes(cursor_r);
|
|
break;
|
|
case RoiEdit::AzimOuter:
|
|
edit_d_min_ = geom.PxlToRes(cursor_r);
|
|
break;
|
|
case RoiEdit::RotatePhiMin:
|
|
edit_phi_min_ = geom.Phi_rad(scenePos.x(), scenePos.y()) * 180.0f / static_cast<float>(PI);
|
|
break;
|
|
case RoiEdit::RotatePhiMax:
|
|
edit_phi_max_ = geom.Phi_rad(scenePos.x(), scenePos.y()) * 180.0f / static_cast<float>(PI);
|
|
break;
|
|
default:
|
|
return; // None: select only, nothing to drag
|
|
}
|
|
updateOverlay();
|
|
|
|
// Live recompute, but keep at most one in flight (cleared in loadImage) so the
|
|
// worker is not flooded with edits faster than it can recompute them.
|
|
if (!live_pending_) {
|
|
live_pending_ = true;
|
|
emit roiGeometryEdited(BuildEditedROIDefinition());
|
|
}
|
|
}
|
|
|
|
void JFJochDiffractionImage::roiEditRelease() {
|
|
if (roi_edit_ == RoiEdit::None)
|
|
return;
|
|
const ROIDefinition rois = BuildEditedROIDefinition();
|
|
roi_edit_ = RoiEdit::None;
|
|
setCursor(Qt::ArrowCursor);
|
|
emit roiGeometryEdited(rois); // final, exact geometry
|
|
}
|
|
|
|
ROIDefinition JFJochDiffractionImage::BuildEditedROIDefinition() const {
|
|
ROIDefinition rois;
|
|
if (image)
|
|
rois = image->Dataset().experiment.ROI().GetROIDefinition();
|
|
const std::string sel = edit_name_.toStdString();
|
|
switch (roi_edit_) {
|
|
case RoiEdit::MoveBox:
|
|
case RoiEdit::ResizeBox:
|
|
for (auto &b : rois.boxes)
|
|
if (b.GetName() == sel) {
|
|
b = ROIBox(sel, std::lround(edit_box_.left()), std::lround(edit_box_.right()),
|
|
std::lround(edit_box_.top()), std::lround(edit_box_.bottom()));
|
|
break;
|
|
}
|
|
break;
|
|
case RoiEdit::MoveCircle:
|
|
case RoiEdit::ResizeCircle:
|
|
for (auto &c : rois.circles)
|
|
if (c.GetName() == sel) {
|
|
c = ROICircle(sel, edit_center_.x(), edit_center_.y(), edit_radius_);
|
|
break;
|
|
}
|
|
break;
|
|
case RoiEdit::AzimInner:
|
|
case RoiEdit::AzimOuter:
|
|
case RoiEdit::RotatePhiMin:
|
|
case RoiEdit::RotatePhiMax:
|
|
for (auto &a : rois.azimuthal)
|
|
if (a.GetName() == sel) {
|
|
a = edit_has_phi_
|
|
? ROIAzimuthal(sel, edit_d_min_, edit_d_max_, edit_phi_min_, edit_phi_max_)
|
|
: ROIAzimuthal(sel, edit_d_min_, edit_d_max_);
|
|
break;
|
|
}
|
|
break;
|
|
default:
|
|
break;
|
|
}
|
|
return rois;
|
|
}
|
|
|
|
void JFJochDiffractionImage::roiScratchDrawn() {
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// The base just drew a scratch box/circle (roiBox/roi_type, in pixel coords);
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// turn it into a new persistent ROI in the list.
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if (!image || roiBox.isNull() || roiBox.width() <= 0 || roiBox.height() <= 0)
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return;
|
|
|
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ROIDefinition rois = image->Dataset().experiment.ROI().GetROIDefinition();
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if (rois.boxes.size() + rois.circles.size() + rois.azimuthal.size() >= 16)
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return;
|
|
|
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std::set<std::string> used;
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for (const auto &b : rois.boxes) used.insert(b.GetName());
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for (const auto &c : rois.circles) used.insert(c.GetName());
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for (const auto &a : rois.azimuthal) used.insert(a.GetName());
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std::string name;
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for (int i = 1; ; i++) {
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name = "roi" + std::to_string(i);
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if (!used.count(name)) break;
|
|
}
|
|
|
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if (roi_type == RoiType::RoiBox) {
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const QRectF r = roiBox.normalized();
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rois.boxes.emplace_back(name, std::lround(r.left()), std::lround(r.right()),
|
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std::lround(r.top()), std::lround(r.bottom()));
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} else {
|
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const QPointF c = roiBox.center();
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const double rad = 0.5 * std::min(roiBox.width(), roiBox.height());
|
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rois.circles.emplace_back(name, c.x(), c.y(), std::max(0.1, rad));
|
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}
|
|
|
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roiBox = QRectF(); // clear the scratch overlay
|
|
selected_roi_ = QString::fromStdString(name);
|
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emit roiSelected(selected_roi_);
|
|
emit roiGeometryEdited(rois);
|
|
}
|
|
|
|
void JFJochDiffractionImage::keyPressEvent(QKeyEvent *event) {
|
|
if (event->key() == Qt::Key_Delete && image && !selected_roi_.isEmpty()) {
|
|
ROIDefinition rois = image->Dataset().experiment.ROI().GetROIDefinition();
|
|
const std::string sel = selected_roi_.toStdString();
|
|
auto erase = [&sel](auto &vec) {
|
|
for (auto it = vec.begin(); it != vec.end(); ++it)
|
|
if (it->GetName() == sel) { vec.erase(it); return true; }
|
|
return false;
|
|
};
|
|
if (erase(rois.boxes) || erase(rois.circles) || erase(rois.azimuthal)) {
|
|
selected_roi_.clear();
|
|
emit roiGeometryEdited(rois);
|
|
}
|
|
event->accept();
|
|
return;
|
|
}
|
|
QGraphicsView::keyPressEvent(event);
|
|
}
|
|
|
|
|
|
void JFJochDiffractionImage::UpdateForeground() {
|
|
if (!image || !auto_fg)
|
|
return;
|
|
if (hdr_mode) {
|
|
const auto val_range = image->ValidMinMax();
|
|
if (val_range.has_value())
|
|
foreground = val_range->second;
|
|
} else {
|
|
foreground = image->GetAutoContrastValue();
|
|
}
|
|
emit foregroundChanged(foreground);
|
|
}
|
|
|
|
void JFJochDiffractionImage::setHDRMode(bool input) {
|
|
hdr_mode = input;
|
|
UpdateForeground();
|
|
GeneratePixmap();
|
|
Redraw();
|
|
}
|
|
|
|
void JFJochDiffractionImage::loadImage(std::shared_ptr<const JFJochReaderImage> in_image) {
|
|
live_pending_ = false; // a live ROI edit (if any) has now been recomputed
|
|
if (in_image) {
|
|
image = in_image;
|
|
UpdateForeground();
|
|
LoadImageInternal();
|
|
GeneratePixmap();
|
|
Redraw();
|
|
CalcROI();
|
|
} else {
|
|
image.reset();
|
|
W = 0; H = 0;
|
|
if (scene())
|
|
scene()->clear();
|
|
resetScenePointers();
|
|
hover_resolution = NAN;
|
|
hover_resolution_item = nullptr;
|
|
|
|
CalcROI();
|
|
}
|
|
}
|
|
|
|
void JFJochDiffractionImage::setAutoForeground(bool input) {
|
|
auto_fg = input;
|
|
// If auto_foreground is not set, then view stays with the current settings till these are explicitly changed
|
|
UpdateForeground();
|
|
GeneratePixmap();
|
|
Redraw();
|
|
emit autoForegroundChanged(auto_fg);
|
|
}
|
|
|
|
void JFJochDiffractionImage::setResolutionRing(QVector<float> v) {
|
|
res_ring = v;
|
|
ring_mode = RingMode::Manual;
|
|
updateOverlay();
|
|
}
|
|
|
|
void JFJochDiffractionImage::showSpots(bool input) {
|
|
show_spots = input;
|
|
updateOverlay();
|
|
}
|
|
|
|
void JFJochDiffractionImage::showPredictions(bool input) {
|
|
show_predictions = input;
|
|
updateOverlay();
|
|
}
|
|
|
|
void JFJochDiffractionImage::setSpotColor(QColor input) {
|
|
spot_color = input;
|
|
updateOverlay();
|
|
}
|
|
|
|
void JFJochDiffractionImage::setPredictionColor(QColor input) {
|
|
prediction_color = input;
|
|
updateOverlay();
|
|
}
|
|
|
|
void JFJochDiffractionImage::showHighestPixels(int32_t v) {
|
|
show_highest_pixels = v;
|
|
updateOverlay();
|
|
}
|
|
|
|
void JFJochDiffractionImage::DrawSaturation() {
|
|
for (const auto &iter: image->SaturatedPixels())
|
|
DrawCross(iter % image->Dataset().experiment.GetXPixelsNum() + 0.5,
|
|
iter / image->Dataset().experiment.GetXPixelsNum() + 0.5, 20, 4);
|
|
}
|
|
|
|
void JFJochDiffractionImage::DrawCross(float x, float y, float size, float width, float z) {
|
|
float sc_size = size / sqrt(scale_factor);
|
|
|
|
QPen pen(feature_color, width);
|
|
pen.setCosmetic(true);
|
|
|
|
QGraphicsLineItem *horizontalLine = scene()->addLine(x - sc_size, y, x + sc_size, y, pen);
|
|
QGraphicsLineItem *verticalLine = scene()->addLine(x, y - sc_size, x, y + sc_size, pen);
|
|
|
|
horizontalLine->setZValue(z); // Ensure it appears above other items
|
|
verticalLine->setZValue(z); // Ensure it appears above other items
|
|
|
|
addOverlayItem(horizontalLine);
|
|
addOverlayItem(verticalLine);
|
|
}
|
|
|
|
void JFJochDiffractionImage::showSaturation(bool input) {
|
|
show_saturation = input;
|
|
GeneratePixmap();
|
|
updateOverlay();
|
|
}
|
|
|
|
void JFJochDiffractionImage::highlightIceRings(bool input) {
|
|
highlight_ice_rings = input;
|
|
updateOverlay();
|
|
}
|
|
|
|
void JFJochDiffractionImage::setResolutionRingMode(RingMode mode) {
|
|
ring_mode = mode;
|
|
updateOverlay();
|
|
}
|
|
|
|
void JFJochDiffractionImage::DrawResolutionText() {
|
|
auto scn = scene();
|
|
if (!scn) {
|
|
hover_resolution_item = nullptr; // scene gone
|
|
return;
|
|
}
|
|
|
|
// Hide item if no valid hover resolution
|
|
if (!image || !std::isfinite(hover_resolution) || hover_resolution <= 0.0f) {
|
|
if (hover_resolution_item)
|
|
hover_resolution_item->setVisible(false);
|
|
return;
|
|
}
|
|
|
|
const QRectF visibleRect = mapToScene(viewport()->geometry()).boundingRect();
|
|
|
|
// Fixed on-screen font size (no dependence on scale_factor)
|
|
QFont font("Arial");
|
|
font.setPixelSize(32); // big, constant size on screen
|
|
|
|
const QString label =
|
|
QString("d = %1 Å").arg(QString::number(hover_resolution, 'f', 2));
|
|
|
|
// Create the item if it does not exist yet; otherwise reuse it
|
|
// NOTE: hover_resolution_item is NOT tracked in overlay_items_ — it is persistent
|
|
if (!hover_resolution_item) {
|
|
hover_resolution_item = scn->addText(label, font);
|
|
hover_resolution_item->setZValue(10.0);
|
|
// Make the text ignore zooming / view transforms
|
|
hover_resolution_item->setFlag(QGraphicsItem::ItemIgnoresTransformations, true);
|
|
} else {
|
|
hover_resolution_item->setFont(font);
|
|
hover_resolution_item->setPlainText(label);
|
|
}
|
|
|
|
hover_resolution_item->setDefaultTextColor(feature_color);
|
|
|
|
// Keep a roughly constant ~10 px margin by compensating with scale_factor
|
|
const qreal margin_px = 10.0;
|
|
const qreal margin_scene = margin_px / std::max(0.0001, scale_factor);
|
|
|
|
QPointF topLeft(visibleRect.left() + margin_scene,
|
|
visibleRect.top() + margin_scene);
|
|
hover_resolution_item->setPos(topLeft);
|
|
hover_resolution_item->setVisible(true);
|
|
}
|
|
|
|
void JFJochDiffractionImage::beforeOverlayCleared() {
|
|
// hover_resolution_item is NOT in overlay_items_, so the selective clear won't touch it.
|
|
// However, if scene()->clear() is ever called (e.g. on loadImage(nullptr)),
|
|
// the caller must also set hover_resolution_item = nullptr separately.
|
|
}
|
|
|
|
void JFJochDiffractionImage::leaveEvent(QEvent *event) {
|
|
// Mouse left the view: clear hover resolution and hide text
|
|
if (std::isfinite(hover_resolution)) {
|
|
hover_resolution = NAN;
|
|
DrawResolutionText();
|
|
}
|
|
JFJochImage::leaveEvent(event);
|
|
} |