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This is an UNSTABLE release. It includes many experimental features, as well as many AI generated fixes. We recommend using rc.152 for production use. * rugnux: Rebrand the offline data-processing subsystem as `rugnux` and consolidate all offline analysis into the single `rugnux` binary - `jfjoch_process` is now `rugnux`, the former `jfjoch_azint` is now `rugnux --azint-only`, and `jfjoch_scale` is now `rugnux --scale` (see the new docs/NAMING.md and docs/RUGNUX.md). Scaling and merging are on by default for rotation and stills (`--no-merge` disables them), replacing the previous opt-in `-M, --scale-merge`. * rugnux: CLI fixes - default `-N` to all hardware threads, parse numeric option arguments strictly (reject non-numeric or trailing input instead of silently yielding 0), require `--wavelength > 0`, and correct the reproduced command line and `--scale` reference-cell handling. * rugnux: De-novo space-group improvements - recover genuine high symmetry and centred Bravais lattices from intensities, add an automatic CC1/2 high-resolution cutoff, and report L-test twinning statistics. * rugnux: Index weakly-diffracting low-resolution rotation data that previously failed (e.g. F-cubic crystals that diffract only to ~4 A on a detector reaching ~1.5 A). The per-frame indexing gate now measures the indexed fraction only within the resolution range the lattice actually diffracts to, so the many sub-diffraction ice/noise spots no longer make the fraction floor unreachable; the two-pass first pass tries several image-sampling schemes (spread across the whole rotation vs a consecutive wedge whose native stride keeps a reflection's rocking curve continuous, letting the FFT resolve a long axis) and keeps the one that indexes the most frames; and the de-novo space-group search no longer discards all reflections (and crashes) when every resolution shell falls below <I/sigma> = 1. * rugnux: Lower the low-resolution R-meas for strongly-diffracting rotation data - drop edge-of-sweep truncated fulls whose rocking curve was captured below `--min-captured-fraction` (default 0.7 for rotation), and report R-meas only over the observations kept by outlier rejection (matching XDS). The 0.7 default also strips the partiality-extrapolated fulls that dominate the intensity second moment on weakly-diffracting crystals, so the de-novo space-group search is no longer starved by the error-model I/sigma floor and recovers the correct symmetry (e.g. the F-cubic Benas crystals: Benas_3 -> F432, Benas_7 -> P6122, instead of P4/P1); on the reference battery every other crystal keeps its space group. * rugnux: Write the refined geometry (beam, tilt, axis) to _process.h5 and place non-standard mmCIF items under a reserved `jfjoch` prefix. * jfjoch_broker: Ordinary acquisition failures (receiver/writer/analysis problems, missed packets, writer disconnect) now return to the Idle state with an Error-severity message, so a run can be retried without an expensive re-initialisation; only failures that leave the detector in an undefined state (new JFJochCriticalException, e.g. PCIe/FPGA faults) go to the Error state and force re-initialisation. * jfjoch_broker: A synchronous /start now reports its failure to the HTTP caller instead of returning HTTP 200, and an incomplete or truncated dataset (missing packets, writer disconnect) is reported as an error rather than a "reduce frame rate" warning. * jfjoch_broker: Drop uncollected placeholder rows (number = -1) from the scan_result REST endpoint. * jfjoch_broker: Fix the inverted per-image compression ratio reported by the Lite receiver (was compressed/uncompressed instead of uncompressed/compressed). * jfjoch_broker: Bragg integration adds a quantization-noise variance floor with a box-sum fallback, and treats the type-maximum marker as an invalid pixel for unsigned image types. * jfjoch_writer: Detect file-overwrite conflicts at start for back-channel transports, and reset the writer when end-of-collection finalisation fails. * jfjoch_viewer: Preview overlays follow the geometry (resolution/ROI arcs, true beam centre, predictions, coral secondary-lattice spots, legend), add save-as-JPEG, and fix an HTTP live-follow memory leak. * Frontend: Improved aesthetics and usability, and added in-browser pixel-mask and JUNGFRAU-pedestal visualisation. * CI: Name the Windows installer jfjoch-viewer-* instead of jfjoch-*.Reviewed-on: #67 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
186 lines
7.0 KiB
C++
186 lines
7.0 KiB
C++
// SPDX-FileCopyrightText: 2024 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
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// SPDX-License-Identifier: GPL-3.0-only
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#pragma once
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#include <cstring>
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#include <string>
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#include <exception>
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enum class JFJochExceptionCategory {
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JSON,
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InputParameterAboveMax,
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InputParameterBelowMin,
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InputParameterInvalid,
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WrongNumber,
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WrongUnit,
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ArrayOutOfBounds,
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HDF5,
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IBVerbs,
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RESTCommandUnknown,
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WrongDAQState,
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WrongReceiverState,
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Detector,
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MemAllocFailed,
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AcquisitionDeviceError,
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GPUCUDAError,
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GainFileOpenError,
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MockFileOpenError,
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Compression,
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SharedMemory,
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ZeroMQ,
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ServiceUndefined,
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TriggerError,
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FileWriteError,
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ZSTDCompressionError,
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LogstashConnectionFailure,
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TIFFGeneratorError,
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gRPCError,
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PreviewError,
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HardwareParityError,
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SpotFinderError,
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PCIeError,
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CBORError,
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UDPError,
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CommunicationError,
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SimplonError,
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CalibrationError
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};
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class JFJochException : public std::exception {
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protected:
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std::string msg;
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JFJochExceptionCategory category;
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static std::string DecodeCategory(JFJochExceptionCategory category) {
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switch (category) {
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case JFJochExceptionCategory::JSON:
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return "JSON parsing or analysis error";
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case JFJochExceptionCategory::InputParameterAboveMax:
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return "Input parameter above max";
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case JFJochExceptionCategory::InputParameterBelowMin:
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return "Input parameter below min";
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case JFJochExceptionCategory::InputParameterInvalid:
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return "Input parameter invalid";
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case JFJochExceptionCategory::WrongNumber:
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return "Wrong number";
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case JFJochExceptionCategory::WrongUnit:
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return "Wrong unit";
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case JFJochExceptionCategory::ArrayOutOfBounds:
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return "Array out of bounds";
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case JFJochExceptionCategory::HDF5:
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return "HDF5 error";
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case JFJochExceptionCategory::IBVerbs:
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return "Infiniband error";
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case JFJochExceptionCategory::RESTCommandUnknown:
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return "REST command unknown";
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case JFJochExceptionCategory::WrongDAQState:
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return "DAQ state error";
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case JFJochExceptionCategory::Detector:
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return "Detector error";
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case JFJochExceptionCategory::MemAllocFailed:
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return "Memory error";
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case JFJochExceptionCategory::AcquisitionDeviceError:
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return "Acquisition device error";
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case JFJochExceptionCategory::GPUCUDAError:
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return "CUDA (GPU) error";
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case JFJochExceptionCategory::GainFileOpenError:
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return "Gain file open error";
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case JFJochExceptionCategory::MockFileOpenError:
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return "Mock file open error";
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case JFJochExceptionCategory::Compression:
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return "Compression error";
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case JFJochExceptionCategory::SharedMemory:
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return "Shared memory error";
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case JFJochExceptionCategory::ZeroMQ:
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return "ZeroMQ error";
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case JFJochExceptionCategory::ServiceUndefined:
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return "Service undefined error";
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case JFJochExceptionCategory::TriggerError:
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return "Trigger error";
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case JFJochExceptionCategory::FileWriteError:
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return "File writer error";
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case JFJochExceptionCategory::ZSTDCompressionError:
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return "Zstd compressor error";
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case JFJochExceptionCategory::LogstashConnectionFailure:
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return "Logstash connection error";
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case JFJochExceptionCategory::TIFFGeneratorError:
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return "TIFF writer error";
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case JFJochExceptionCategory::gRPCError:
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return "Remote node (gRPC) error";
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case JFJochExceptionCategory::PreviewError:
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return "Preview error";
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case JFJochExceptionCategory::HardwareParityError:
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return "Parity error (HW)";
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case JFJochExceptionCategory::SpotFinderError:
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return "Spot finder";
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case JFJochExceptionCategory::PCIeError:
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return "PCIe driver error";
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case JFJochExceptionCategory::CBORError:
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return "CBOR serialization error";
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case JFJochExceptionCategory::UDPError:
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return "UDP simulator error";
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case JFJochExceptionCategory::CommunicationError:
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return "Communication error";
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case JFJochExceptionCategory::SimplonError:
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return "Simplon API error";
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case JFJochExceptionCategory::CalibrationError:
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return "Detector calibration error";
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default:
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return "";
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}
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}
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public:
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JFJochException(JFJochExceptionCategory in_val, const std::string &description) noexcept :
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category(in_val) {
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try {
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msg = DecodeCategory(category) + " (" + description + ")";
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} catch (...) {}
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}
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JFJochException(const JFJochException &e) noexcept {
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try {
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category = e.category;
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msg = e.msg;
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} catch (...) {}
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}
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[[nodiscard]] const char *what() const noexcept override {
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return msg.c_str();
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}
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};
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class WrongDAQStateException : public JFJochException {
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public:
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explicit WrongDAQStateException(const std::string &description)
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: JFJochException(JFJochExceptionCategory::WrongDAQState, description) {}
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};
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// Thrown when an operation leaves a subsystem (typically the detector) in an undefined state that a
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// simple retry cannot recover from - the broker must re-initialise. The state machine catches this
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// separately and goes to the Error state, whereas ordinary acquisition failures return to Idle.
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class JFJochCriticalException : public JFJochException {
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public:
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explicit JFJochCriticalException(const std::string &description,
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JFJochExceptionCategory in_category = JFJochExceptionCategory::Detector)
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: JFJochException(in_category, description) {}
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};
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// A PCIe/FPGA hardware fault leaves the acquisition device in an undefined state that a retry cannot
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// recover from, so it is critical: the state machine forces re-initialisation (Error state) rather
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// than returning to Idle as it does for ordinary acquisition failures.
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class PCIeDeviceException : public JFJochCriticalException {
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public:
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explicit PCIeDeviceException(const std::string &description)
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: JFJochCriticalException(description, JFJochExceptionCategory::PCIeError) {
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msg += " (" + std::string(strerror(errno)) + ")";
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}
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};
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// Thrown by JFJochBitShuffleCompressor::Compress when the compressed output does not fit in the
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// caller-provided destination buffer. Lets callers (e.g. the receiver) drop just that frame.
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class CompressionBufferTooSmallException : public JFJochException {
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public:
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explicit CompressionBufferTooSmallException(const std::string &description)
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: JFJochException(JFJochExceptionCategory::Compression, description) {}
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};
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