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Jungfraujoch/broker/jfjoch_broker.cpp
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leonarski_fandFilip Leonarski 19b135186d
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v1.0.0-rc.175 (#85)
* Rugnux: Processes a collection live while jfjoch_broker writes it (`rugnux <master.h5> <broker URL>`).
* Rugnux: Processing starts on the first images and confirms its choices once all are in, so analysis can begin during collection.
* Rugnux: Faster processing, especially on servers with several GPUs and CPU sockets and on computers without a GPU (`--no-gpu`, macOS).
* Rugnux: Uses much less GPU memory, so large data sets stay on the GPU of smaller cards, and a data set too large for the card is processed on the CPU instead.
* Rugnux: On macOS, Bragg integration runs on the Apple GPU.
* Rugnux: Better handling of twinning and pseudo-symmetry, with the twin hypothesis written as `<prefix>_twin_<SG>.mtz`, and a wrong `--model` no longer confirms the data or decides the hand.
* Rugnux: `--model` accepts predicted (AlphaFold) models and falls back to molecular replacement when the model is not placed as a rigid body (experimental `--mr` forces it), settling space group, hand and twinning and writing a different answer as `<prefix>_mr.mtz`.
* Rugnux: Molecular replacement is faster and settles the space group in more cases with several copies in the asymmetric unit.
* Rugnux: Deposition-ready mmCIF, a richer report, and numbered steps on the terminal with the full log in `<prefix>_log.txt`; `_P1.mtz`, `--estimate-beam-center` and `--beam-center-search` are removed.
* Rugnux: The beam-stop shadow is found correctly on tilted detectors.
* Rugnux: Stills files that record a stationary goniometer axis get the default stills geometry refinement.
* jfjoch_viewer: "Analyze dataset" uses the same defaults as a bare `rugnux <file>`, and shows the results of processed CBF, marCCD and SMV sweeps.
* jfjoch_viewer: The Files panel refreshes on F5 and every few seconds, and the plot type and other selections stay put during live collection.
* jfjoch_writer: Memory stays bounded and old data files are closed efficiently on long runs, any failure ends the run in an error state the broker is told about, and the master file appears only after its data files; the ZeroMQ pusher logs when a stalled writer makes it drop images.
* Fixes: The TCP image pusher no longer blocks the broker's receiver, GPU out-of-memory failures stop with a clear message, and the XDS plugin masks module and chip edges.

---------

Co-authored-by: Filip Leonarski <jungfrau@filips-mac-mini.home>
Reviewed-on: #85
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
2026-10-16 15:34:43 +02:00

145 lines
4.5 KiB
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// SPDX-FileCopyrightText: 2024 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
// SPDX-License-Identifier: GPL-3.0-only
// Using OpenAPI licensed with Apache License 2.0
#include <csignal>
#include <fstream>
#include <iostream>
#include <vector>
#include <nlohmann/json.hpp>
#include "../common/Logger.h"
#include "../common/print_license.h"
#include "../detector_control/DectrisSimplonClient.h"
#include "../writer/HDF5Objects.h"
#include "JFJochBrokerHttp.h"
#include "JFJochBrokerParser.h"
static httplib::Server *httpServer = nullptr;
static void sigHandler [[noreturn]] (int sig) {
switch (sig) {
case SIGINT:
case SIGQUIT:
case SIGTERM:
case SIGHUP:
default:
if (httpServer)
httpServer->stop();
break;
}
std::exit(0);
}
static void setUpUnixSignals(std::vector<int> quitSignals) {
sigset_t blocking_mask;
sigemptyset(&blocking_mask);
for (auto sig : quitSignals)
sigaddset(&blocking_mask, sig);
struct sigaction sa;
sa.sa_handler = sigHandler;
sa.sa_mask = blocking_mask;
sa.sa_flags = 0;
for (auto sig : quitSignals)
sigaction(sig, &sa, nullptr);
}
int main(int argc, char **argv) {
RegisterHDF5Filter();
print_license("jfjoch_broker");
if ((argc == 1) || (argc > 3)) {
std::cout << "Usage ./jfjoch_broker <JSON config> {<TCP http port>}" << std::endl;
return EXIT_FAILURE;
}
uint16_t http_port = 5232;
if (argc >= 3) http_port = static_cast<uint16_t>(std::atoi(argv[2]));
Logger logger("jfjoch_broker");
org::openapitools::server::model::Jfjoch_settings settings;
std::ifstream file(argv[1]);
try {
nlohmann::json input = nlohmann::json::parse(file);
settings = input;
settings.validate();
logger.Info("JSON configuration file read properly");
} catch (const std::exception &e) {
logger.Error("Error reading JSON configuration file: " + std::string(e.what()));
return EXIT_FAILURE;
}
if (settings.numaPolicyIsSet())
logger.Warning("NUMA policy is deprecated and ignored - processed are split over all the CPUs/GPUs in the system");
if (settings.verboseIsSet() && settings.isVerbose())
logger.Verbose(true);
else
logger.Verbose(false);
std::unique_ptr<ImagePusher> image_pusher = ParseImagePusher(settings);
if (image_pusher)
logger.Info(image_pusher->PrintSetup());
std::vector<DetectorSetup> det_setup;
for (const auto &d: settings.getDetector())
det_setup.push_back(ParseDetectorSetup(d));
if (det_setup.empty()) {
logger.Error("At least one detector need to be defined in the config file");
return EXIT_FAILURE;
}
DiffractionExperiment experiment(det_setup[0]);
ParseFacilityConfiguration(settings, experiment);
SpotFindingSettings spot_finding_settings = ParseSpotFindingSettings(settings);
AcquisitionDeviceGroup aq_devices;
ParseAcquisitionDeviceGroup(settings, aq_devices);
experiment.DataStreams(aq_devices.size());
int32_t send_buffer_size_MiB = settings.getImageBufferMiB();
std::unique_ptr<JFJochReceiverService> receiver =
std::make_unique<JFJochReceiverService>(aq_devices, logger, *image_pusher, send_buffer_size_MiB);
ParseReceiverSettings(settings, *receiver);
JFJochBrokerHttp broker(experiment, spot_finding_settings);
broker.FrontendDirectory(settings.getFrontendDirectory());
for (const auto &d: det_setup)
broker.AddDetectorSetup(d);
if (receiver)
broker.Services().Receiver(receiver.get());
httplib::Server server;
httpServer = &server;
// Set here rather than through httplib's compile-time default: a reader following a collection
// holds one thread for the whole run (/live/events), beside the web frontend's polling.
server.new_task_queue = [] { return new httplib::ThreadPool(16, 64); };
server.Get("/", [](const httplib::Request &req, httplib::Response &res) {
res.status = 302; // Found (temporary redirect)
res.set_header("Location", "/frontend");
});
server.set_mount_point("/frontend", settings.getFrontendDirectory());
signal(SIGPIPE, SIG_IGN);
std::vector<int> sigs{SIGQUIT, SIGINT, SIGTERM, SIGHUP};
setUpUnixSignals(sigs);
broker.attach(server);
if (!server.listen("0.0.0.0", http_port)) {
logger.Error("Failed to start HTTP server");
return EXIT_FAILURE;
}
return EXIT_SUCCESS;
}