--polarization was applied with the other geometry overrides, but
configure_offline_output runs afterwards and calls ApplyRugnuxExperimentDefaults,
which sets the polarization factor unconditionally. Every full-analysis run used
0.99 whatever was asked for, so the Lp correction was wrong at a beamline with
different polarization. Apply it after the defaults instead, and stop claiming in
RugnuxDefaults.h that nothing here is user-selectable.
--scale built a bare ScalingSettings and re-derived the rotation/stills split by
hand rather than calling RugnuxDefaultScalingSettings, which is what the split was
factored out for. It got scale-fulls, smooth-G, min-captured-fraction and outlier
rejection right and dropped CaptureUncertaintyCoeff on the floor: 1.0 in the
pipeline, 0.0 here. So re-scaling a rotation _process.h5 gave different sigmas and
ISa than the run that wrote it - the exact failure the block's own comment says it
exists to prevent. Start from the shared defaults and apply the overrides on top,
which also picks up --mosaicity and --search-min-zeta, and let -C bind here too.
REJECT_OUTLIERS_DEFAULT_NSIGMA had no reader left afterwards.
Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
leonarski_fandClaude Opus 5
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