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Jungfraujoch/docker/rocky9/Dockerfile
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leonarski_fandClaude Opus 4.8 d90d498cdb docker: put the static libdbus on CMAKE_PREFIX_PATH for Qt6::DBus consumers 
The Qt build found dbus via -DDBus1_DIR, but a static Qt records the dependency
and every consumer re-runs find_package(DBus1) through Qt's exported config
(Qt6Gui -> Qt6DBus -> find_dependency(WrapDBus1)). Without the dbus prefix on
the consumer's search path that fails:

  Could NOT find WrapDBus1 (missing: DBus1_LIBRARY DBus1_INCLUDE_DIR ...)
  Qt6DBus could not be found because dependency WrapDBus1 could not be found.

Add /opt/dbus-<ver>-static to the image's CMAKE_PREFIX_PATH env so the viewer
build (and the CI .deb/.rpm and tarball builds) resolve it. Verified against the
rocky9 image: find_package(Qt6 ... DBus) fails with the old path and passes with
dbus on the env CMAKE_PREFIX_PATH.

Also make build_in_rocky9.sh self-sufficient on images built before this fix:
it discovers /opt/dbus-*-static/lib/cmake/DBus1 and passes -DDBus1_DIR, so the
viewer verification works without rebuilding the image first.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-07-13 19:13:29 +02:00

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FROM nvidia/cuda:13.3.0-devel-rockylinux9
LABEL authors="leonarski_f"
ARG OPENSSL_VERSION=3.5.4
ARG QT_VERSION=6.9.1
ARG DBUS_VERSION=1.14.10
ARG NODE_MAJOR=22
ARG EIGEN_VERSION=3.4.0
# HDF5, libtiff and libjpeg-turbo are built by the jungfraujoch CMake itself (FetchContent /
# ExternalProject). Eigen is an external find_package(Eigen3 3.4) dependency, installed from source
# below (3.4.x is required; Eigen's same-major-version rule rejects 5.x).
ARG DIALS_VERSION=3.27.0
ARG DIALS_TARBALL_URL=https://github.com/dials/dials/releases/download/v3.27.0/dials-v3-27-0-linux-x86_64.tar.xz
ARG DIALS_PREFIX=/opt
# Update base, enable CRB (RHEL/Rocky 9), and install toolchain + Qt deps
RUN dnf -y update && \
dnf -y install \
'dnf-command(config-manager)' && \
dnf config-manager --set-enabled crb && \
dnf -y install --enablerepo=devel \
dnf-plugins-core \
epel-release \
git \
which \
ca-certificates \
wget \
tar \
xz \
make \
cmake \
gcc-toolset-13 \
gcc-toolset-13-gcc \
gcc-toolset-13-gcc-c++ \
gcc-toolset-13-gdb \
rpm-build \
rpmdevtools \
numactl-devel \
redhat-rpm-config \
ninja-build \
python3 \
python3.12 \
perl \
nasm \
pkgconf-pkg-config \
libxcb-devel \
xcb-util-*-devel \
libxcb-devel \
libxkbcommon-devel \
libxkbcommon-x11-devel \
libX11-devel \
libXext-devel \
libXrender-devel \
libXi-devel \
libXrandr-devel \
libXcursor-devel \
libXfixes-devel \
libXinerama-devel \
mesa-libGL-devel \
mesa-libEGL-devel \
expat-devel \
krb5-devel \
zlib-devel \
zlib-static \
zlib-static \
fontconfig-devel \
mesa-dri-drivers \
libdrm-devel \
libglvnd-core-devel \
libglvnd-devel \
glibc-langpack-en \
glibc-locale-source \
freetype-devel && \
dnf clean all && rm -rf /var/cache/dnf
RUN set -eux; \
cd /tmp; \
curl -LO https://www.openssl.org/source/openssl-${OPENSSL_VERSION}.tar.gz; \
tar -xf openssl-${OPENSSL_VERSION}.tar.gz; \
cd openssl-${OPENSSL_VERSION}; \
./Configure linux-x86_64 no-shared no-module no-tests --prefix=/opt/openssl-${OPENSSL_VERSION} --libdir=lib; \
make -j"$(nproc)"; \
make install_sw; \
cd /; rm -rf /tmp/openssl-${OPENSSL_VERSION} /tmp/openssl-${OPENSSL_VERSION}.tar.gz
# Expose static OpenSSL to CMake/pkg-config
ENV OPENSSL_ROOT_DIR=/opt/openssl-${OPENSSL_VERSION}
ENV PKG_CONFIG_PATH=${OPENSSL_ROOT_DIR}/lib/pkgconfig:${OPENSSL_ROOT_DIR}/lib64/pkgconfig:${PKG_CONFIG_PATH}
# Install a recent Node.js (NodeSource). Change NODE_MAJOR if you want another major version.
RUN curl -fsSL https://rpm.nodesource.com/setup_${NODE_MAJOR}.x | bash - && \
dnf -y install nodejs && \
dnf clean all && rm -rf /var/cache/dnf && \
node --version && npm --version && (corepack enable || true)
# Make GCC/G++ 13 the default for builds
ENV GCC_TOOLSET_ROOT=/opt/rh/gcc-toolset-13/root
ENV PATH=${GCC_TOOLSET_ROOT}/usr/bin:${PATH}
ENV CC=${GCC_TOOLSET_ROOT}/usr/bin/gcc
ENV CXX=${GCC_TOOLSET_ROOT}/usr/bin/g++
# Static libdbus: link D-Bus into the viewer (Qt6::DBus) instead of pulling libdbus-1.so.3 at runtime.
# A distro libdbus-1.so drags in libsystemd (-> libzstd/liblz4/libcap/libgcrypt/libgpg-error) and
# libselinux (-> libpcre2). Disabling those integrations makes libdbus-1.a depend on ~libc alone, so
# that whole runtime .so tail disappears while the viewer keeps its single-instance / remote-control
# D-Bus feature -- it is a pure session-bus client (registers a name + exports an adaptor), so the
# daemon-side systemd/selinux features are irrelevant. Static-only install (no .so); the Qt build
# finds it through find_package(DBus1) via the -DDBus1_DIR hint (the CMake package config dbus
# installs, which imports libdbus-1.a). Built -fPIC (--with-pic) so the archive links into Qt's PIE
# tools (qdbusxml2cpp). expat is only a configure-time dep of the dbus daemon; the client libdbus-1
# links neither expat nor systemd.
RUN set -eux; \
cd /tmp; \
curl -LO https://dbus.freedesktop.org/releases/dbus/dbus-${DBUS_VERSION}.tar.xz; \
tar -xf dbus-${DBUS_VERSION}.tar.xz; \
cd dbus-${DBUS_VERSION}; \
./configure --prefix=/opt/dbus-${DBUS_VERSION}-static \
--enable-static --disable-shared --with-pic \
--disable-systemd --without-systemdsystemunitdir \
--disable-selinux --disable-apparmor --disable-libaudit \
--disable-tests --disable-asserts \
--disable-doxygen-docs --disable-xml-docs --disable-ducktype-docs \
CFLAGS="-fPIC"; \
make -j"$(nproc)"; \
make install; \
cd /; rm -rf /tmp/dbus-${DBUS_VERSION} /tmp/dbus-${DBUS_VERSION}.tar.xz
# Put the static libdbus pkgconfig ahead of the system one so Qt6::DBus resolves to the .a
ENV PKG_CONFIG_PATH=/opt/dbus-${DBUS_VERSION}-static/lib/pkgconfig:${PKG_CONFIG_PATH}
# Build and install static Qt 6.9 with Core, Gui, Widgets, Charts, DBus
ARG QT_PREFIX=/opt/qt-${QT_VERSION}-static
RUN set -eux; \
cd /tmp; \
curl -LO https://download.qt.io/official_releases/qt/6.9/${QT_VERSION}/single/qt-everywhere-src-${QT_VERSION}.tar.xz; \
tar -xf qt-everywhere-src-${QT_VERSION}.tar.xz; \
mkdir -p qt-everywhere-src-${QT_VERSION}/build && cd qt-everywhere-src-${QT_VERSION}/build; \
cmake -G Ninja \
-DQT_BUILD_SUBMODULES="qtbase;qtshadertools;qtdeclarative;qtcharts;qt3d" \
-DBUILD_SHARED_LIBS=OFF \
-DQT_BUILD_TESTS=OFF \
-DQT_BUILD_EXAMPLES=OFF \
-DQT_FEATURE_dbus=ON \
-DQT_FEATURE_dbus_linked=ON \
-DDBus1_DIR=/opt/dbus-${DBUS_VERSION}-static/lib/cmake/DBus1 \
-DQT_FEATURE_xcb=ON \
-DQT_FEATURE_xcb_xlib=OFF \
-DQT_FEATURE_xkbcommon_x11=ON \
-DQT_FEATURE_opengl=ON \
-DQT_FEATURE_opengl_desktop=ON \
-DQT_FEATURE_opengl_dynamic=OFF \
-DQT_FEATURE_vulkan=OFF \
-DQT_FEATURE_glib=OFF \
-DCMAKE_BUILD_TYPE=Release \
-DCMAKE_INSTALL_PREFIX=${QT_PREFIX} \
-DCMAKE_C_COMPILER=${CC} \
-DCMAKE_CXX_COMPILER=${CXX} \
-DQT_FEATURE_openssl=ON \
-DQT_FEATURE_openssl_linked=ON \
-DOPENSSL_USE_STATIC_LIBS=TRUE \
..; \
cmake --build . -j"$(nproc)"; \
cmake --install .; \
cd /; rm -rf /tmp/qt-everywhere-src-${QT_VERSION} /tmp/qt-everywhere-src-${QT_VERSION}.tar.xz
# Install DIALS using the official binary tarball workflow
RUN set -eux; \
cd /tmp; \
curl -fL -o dials.tar.xz "${DIALS_TARBALL_URL}"; \
tar -xJf dials.tar.xz; \
cd dials-installer; \
./install --prefix="${DIALS_PREFIX}"; \
cd /; \
rm -rf /tmp/dials.tar.xz /tmp/dials-*-linux-x86_64
RUN set -eux; \
mkdir -p /opt/xds; \
cd /tmp; \
curl -fL -o XDS-gfortran_Linux_x86_64.tar.gz https://xds.mr.mpg.de/XDS-gfortran_Linux_x86_64.tar.gz; \
tar -xzf XDS-gfortran_Linux_x86_64.tar.gz; \
cp -a /tmp/XDS-gfortran_Linux_x86_64/. /opt/xds/
RUN set -eux; \
cd /tmp; \
curl -fL -o dectris-neggia-1.2.0.el7.tar.gz \
https://github.com/dectris/neggia/files/6585943/dectris-neggia-1.2.0.el7.tar.gz; \
tar -xzf dectris-neggia-1.2.0.el7.tar.gz; \
find . -name 'dectris-neggia*.so' -print; \
mkdir -p /opt/xds; \
cp -av "$(find . -name 'dectris-neggia*.so' | head -n 1)" /opt/xds/dectris-neggia.so; \
chmod 755 /opt/xds/dectris-neggia.so; \
rm -rf /tmp/dectris-neggia-1.2.0.el7.tar.gz /tmp/*
RUN dnf -y install python3-Cython python3-pip python3-devel && dnf clean all
RUN set -eux; \
wget --tries=5 --waitretry=5 \
-O /opt/xds/durin-plugin.so \
https://gitea.psi.ch/mx/durin/releases/download/1.0.0/libdurin-plugin.so.1.0.0
# Eigen 3.4 (header-only) -- external find_package(Eigen3 3.4) dependency, installed to /opt/eigen-3.4.
RUN set -eux; \
cd /tmp; \
git clone --depth 1 --branch ${EIGEN_VERSION} https://gitlab.com/libeigen/eigen.git; \
cmake -G Ninja -S eigen -B eigen-build -DCMAKE_INSTALL_PREFIX=/opt/eigen-3.4 \
-DEIGEN_BUILD_BLAS=OFF -DEIGEN_BUILD_LAPACK=OFF -DEIGEN_BUILD_DOC=OFF -DBUILD_TESTING=OFF; \
cmake --install eigen-build; \
cd /; rm -rf /tmp/eigen /tmp/eigen-build
# Make Qt, the static libdbus, and Eigen discoverable by CMake. The static libdbus prefix is
# required here (not only at Qt build time): every Qt6::DBus consumer re-runs find_package(DBus1)
# through Qt's exported config, so DBus1Config.cmake must be on CMAKE_PREFIX_PATH for the viewer build.
ENV CMAKE_PREFIX_PATH=/opt/qt-${QT_VERSION}-static:/opt/dbus-${DBUS_VERSION}-static:/opt/eigen-3.4
ENV LANG=en_US.UTF-8
ENV LANGUAGE=en_US:en
ENV LC_ALL=en_US.UTF-8
# Set workdir for your project
WORKDIR /workspace
# Default entrypoint: interactive shell
CMD ["/bin/bash", "-l"]
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