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Jungfraujoch/image_analysis/bragg_integration
leonarski_fandClaude Opus 5 b650cda037
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Revert "integration: the background is fitted over the ring that survives, not averaged over it"
This reverts commit 6a3ae9c65.

The rotation battery refuses it. The median is clean - zero movement in R_meas and CC1/2, most
crystals untouched or moving in the third decimal, which is what was predicted - but the tail is
not a cost, it is a failure: one crystal's CC1/2 falls from 91.3% to 6.8% with its reflection and
observation counts essentially unchanged, so the intensities are being corrupted rather than the
weak ones discarded. Another loses seven points of R_meas and half its ISa; a third has its
high-shell CC1/2 go negative; a fourth's ISa doubles, which is an error model measuring something
different rather than measuring better.

The change was predicted to cost one to two points of high-shell CC1/2 on crowded patterns, and
that prediction was made on six geometries. Fifty-one say otherwise.

The defect it fixes is real and stays on the record: within the outer background radius of the
array edge the ring is truncated inward while the disk is not, so the surviving ring sits where
the radial background is higher and the reflection reads low - measured at 1.79 counts per pixel
four pixels from a border, and confirmed by a masked gap producing the same bias signed by the
direction of its displacement. Fitting the background over the surviving ring is the right shape
of answer. Doing it per reflection, from a ring that a neighbour mask has often already truncated,
is evidently not.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01EFEJG6WBQv8th4UJFNe53N
2026-09-07 16:30:22 +02:00
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