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Jungfraujoch/viewer/image_viewer/JFJochDiffractionImage.cpp
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leonarski_fandClaude Sonnet 5 d24cdfcff4 jfjoch_viewer: navigation keys, one-shot auto-contrast, file manager panel, cleanup
* Dataset-info plot hover shows a horizontal crosshair alongside the existing
  vertical one, so a run of hovers reads as a level or a drift at a glance.
* `A` applies auto-contrast once instead of switching on persistent Auto mode
  (a new `oneShotAutoForeground()`, distinct from the toolbar's Auto toggle);
  pressing it a second time on the same image switches Auto on for good, and
  pressing it while Auto is already on leaves it on. The value itself comes
  from one `AutoForegroundValue()` shared with the continuous Auto path.
* `Home`/`End`/`Page Up`/`Page Down` navigate the dataset (first/last image,
  one image forward/back); claimed in the diffraction view's keyPressEvent
  before QGraphicsView's default handling, which otherwise eats them to
  scroll the viewport.
* Alt+wheel dataset navigation is removed - some window managers already
  took it before the app ever saw it, per the caveat that used to sit next
  to its entry in the shortcuts list.
* The image strip dock and its dedicated thumbnail-rendering machinery in
  the reading worker (SetThumbnail*, RenderThumbnail_i) are removed; it cost
  a lot and nothing else used any of it.
* Toolbar text: "Colour" -> "Color".
* Color map, Auto and HDR mode now persist across sessions, the same way the
  window layout already does.
* The Inspector's "Dataset:" path wraps at '/' (a zero-width space after
  each one) instead of being cut off when it doesn't fit one line.
* LoadFile no longer reopens an already-open file - it forwards straight to
  LoadImage instead - which was the likely cause of a D-Bus client's per-image
  navigation lagging behind the same navigation done via the grid-scan hover.
* New file-manager dock (left, tabbed with Settings via tabifyDockWidget):
  a directory tree filtered to *_master.h5/*_process.h5, rooted at
  JUNGFRAUJOCH_DATA_ROOT if set, else the last-browsed root, else the home
  directory. Most beamline users care about opening images, not
  reprocessing settings, so it's the tab raised by default. Its filter box
  narrows files only - a directory always passes - because filtering the
  directories too hid the matching files under any directory whose own name
  did not match, and hid the root's ancestors, which left the tree with no
  valid root index until the root was set again by hand.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01PogHY7bWXV4bpctDPdyuDN
Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
2026-09-11 18:45:20 +02:00

1147 lines
43 KiB
C++

// SPDX-FileCopyrightText: 2025 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
// SPDX-License-Identifier: GPL-3.0-only
#include <set>
#include "JFJochDiffractionImage.h"
#include "../../common/DiffractionGeometry.h"
#include "../../common/JFJochMath.h"
#include "../../common/ROIAzimuthal.h"
#include "../../image_analysis/bragg_integration/SystematicAbsence.h"
#include "../widgets/ROIColorPalette.h"
#include <QPainterPath>
#include <QBrush>
#include <QKeyEvent>
#include <QGraphicsPixmapItem>
#include <QGraphicsSimpleTextItem>
#include <QGraphicsScene>
#include <QWheelEvent>
#include <QScrollBar>
#include <QMenu>
#include <cmath>
#include <limits>
#include <QMouseEvent>
#include "JFJochSimpleImage.h"
// Constructor
static bool InPhiSector(float phi, float phi_min, float phi_max) {
if (phi_min <= phi_max)
return phi >= phi_min && phi <= phi_max;
return phi >= phi_min || phi <= phi_max;
}
JFJochDiffractionImage::JFJochDiffractionImage(QWidget *parent) : JFJochImage(parent) {
setFocusPolicy(Qt::StrongFocus); // so the Delete key reaches the view
}
JFJochImage::ResizeHandle JFJochDiffractionImage::hitTestBoxHandle(const QRectF &r, const QPointF &p, qreal tol) const {
auto on = [&](qreal a, qreal b) { return std::abs(a - b) <= tol; };
const bool L = on(p.x(), r.left()), R = on(p.x(), r.right());
const bool T = on(p.y(), r.top()), B = on(p.y(), r.bottom());
const bool inX = p.x() >= r.left() - tol && p.x() <= r.right() + tol;
const bool inY = p.y() >= r.top() - tol && p.y() <= r.bottom() + tol;
if (L && T) return ResizeHandle::TopLeft;
if (R && T) return ResizeHandle::TopRight;
if (L && B) return ResizeHandle::BottomLeft;
if (R && B) return ResizeHandle::BottomRight;
if (L && inY) return ResizeHandle::Left;
if (R && inY) return ResizeHandle::Right;
if (T && inX) return ResizeHandle::Top;
if (B && inX) return ResizeHandle::Bottom;
if (r.contains(p)) return ResizeHandle::Inside;
return ResizeHandle::None;
}
void JFJochDiffractionImage::azimuthalHandles(const ROIAzimuthal &az, const DiffractionGeometry &geom,
QPointF &inner, QPointF &outer, QPointF &phimin, QPointF &phimax) const {
const float d2r = static_cast<float>(PI) / 180.0f;
const float phi0 = az.GetPhiMin_deg();
const float phi1 = az.GetPhiMax_deg();
const float mid_phi = az.HasPhi()
? (phi1 >= phi0 ? (phi0 + phi1) / 2.0f : std::fmod((phi0 + phi1 + 360.0f) / 2.0f, 360.0f))
: 0.0f;
const float r_inner = geom.ResToPxl(az.GetDMax_A());
const float r_outer = geom.ResToPxl(az.GetDMin_A());
const float d_mid = geom.PxlToRes((r_inner + r_outer) / 2.0f);
auto pt = [&](float d, float phi_deg) -> QPointF {
try {
auto [x, y] = geom.ResPhiToPxl(d, phi_deg * d2r);
return QPointF(x, y);
} catch (...) {
return QPointF(-1e9, -1e9); // off-image: never matches a handle hit-test
}
};
inner = pt(az.GetDMax_A(), mid_phi);
outer = pt(az.GetDMin_A(), mid_phi);
phimin = pt(d_mid, phi0);
phimax = pt(d_mid, phi1);
}
void JFJochDiffractionImage::mouseHover(const QPointF &coord, Qt::KeyboardModifiers) {
if (image && (coord.x() >= 0)
&& (coord.x() < image->Dataset().experiment.GetXPixelsNum())
&& (coord.y() >= 0)
&& (coord.y() < image->Dataset().experiment.GetYPixelsNum())) {
float res = image->Dataset().experiment.GetDiffractionGeometry().PxlToRes(coord.x(), coord.y());
int32_t intensity = image->Image()[std::floor(coord.x()) +
std::floor(coord.y()) * image->Dataset().experiment.GetXPixelsNum()];
QString intensity_str = QString("I=%1").arg(intensity, 9);
if (intensity == SATURATED_PXL_VALUE)
intensity_str = "I=Saturated";
else if (intensity == GAP_PXL_VALUE)
intensity_str = " Gap ";
else if (intensity == ERROR_PXL_VALUE)
intensity_str = " Bad pxl ";
else if (intensity == BEAM_STOP_PXL_VALUE)
intensity_str = " Beam stop ";
emit writeStatusBar(QString("x=%1 y=%2 %3 d=%4 Å")
.arg(coord.x(), 0, 'f', 1)
.arg(coord.y(), 0, 'f', 1)
.arg(intensity_str)
.arg(res, 0, 'f', 2));
// Update hovered resolution text without rebuilding the whole overlay
hover_resolution = res;
DrawResolutionText();
} else {
emit writeStatusBar("");
// Clear hover resolution text when outside image
if (std::isfinite(hover_resolution)) {
hover_resolution = NAN;
DrawResolutionText();
}
}
}
void JFJochDiffractionImage::LoadImageInternal() {
if (!image)
return;
W = image->Dataset().experiment.GetXPixelsNum();
H = image->Dataset().experiment.GetYPixelsNum();
}
void JFJochDiffractionImage::ColorRow(size_t y, const PixelColorMap &map, QRgb *out) const {
const int32_t *row = &image->Image()[y * W];
for (size_t x = 0; x < W; ++x) {
const int32_t v = row[x];
// The markers occupy the extremes of the int32 range, so one range test separates them
// from every real pixel value (MIN_REAL_PXL_VALUE moves when a marker is added)
rgb c;
if (v >= MIN_REAL_PXL_VALUE && v < SATURATED_PXL_VALUE)
c = map.Apply(static_cast<float>(v));
else if (v == GAP_PXL_VALUE)
c = map.gap;
else if (v == BEAM_STOP_PXL_VALUE)
c = map.beam_stop;
else
c = (v == ERROR_PXL_VALUE) ? map.bad : map.saturated;
out[x] = qRgb(c.r, c.g, c.b);
}
}
void JFJochDiffractionImage::DrawSpots() {
// Compute current visible area in scene coordinates
const QRectF visibleRect = mapToScene(viewport()->geometry()).boundingRect();
for (const auto &s: image->ImageData().spots) {
// Skip reflections outside the viewport
if (!visibleRect.contains(QPointF{s.x, s.y}))
continue;
if (hide_unindexed_spots && !s.indexed)
continue;
if (hide_ice_ring_spots && s.ice_ring)
continue;
const qreal desired_half_px = 8.0;
const qreal spot_size = desired_half_px / std::sqrt(std::max(0.0001, scale_factor));
QColor pen_color = spot_color;
if (s.indexed)
pen_color = (s.lattice >= 1) ? second_lattice_color : feature_color;
else if (highlight_ice_rings && s.ice_ring)
pen_color = ice_ring_color;
QPen pen(pen_color, 3);
pen.setCosmetic(true);
auto *rect = scene()->addRect(s.x - spot_size + 0.5,
s.y - spot_size + 0.5,
2 * spot_size,
2 * spot_size,
pen);
addOverlayItem(rect);
}
}
void JFJochDiffractionImage::DrawPredictions() {
QFont font("Arial", 2); // Font for pixel value text
font.setPixelSize(2); // This will render very small text (1-pixel high).
const qreal desired_half_px = 8.0;
const qreal spot_size = desired_half_px / std::sqrt(std::max(0.0001, scale_factor));
QColor pen_color = prediction_color;
QPen pen(pen_color, 3);
pen.setCosmetic(true);
// Compute current visible area in scene coordinates
const QRectF visibleRect = mapToScene(viewport()->geometry()).boundingRect();
// In space-group search mode the centering-absent reflections are integrated (to confirm the
// centering), but they are not real predictions - keep them out of the overlay.
const char centering = image->ImageData().lattice_type.has_value()
? image->ImageData().lattice_type->centering : 'P';
for (const auto &s: image->ImageData().reflections) {
if (systematic_absence(s.h, s.k, s.l, centering))
continue;
// Skip reflections outside the viewport
if (!visibleRect.contains(QPointF{s.predicted_x, s.predicted_y}))
continue;
auto *ellipse = scene()->addEllipse(s.predicted_x - spot_size + 0.5f,
s.predicted_y - spot_size + 0.5f,
2.0f * spot_size,
2.0f * spot_size,
pen);
addOverlayItem(ellipse);
// When zoomed in enough, draw "h k l" above the box
if (scale_factor >= 10.0) {
// Format label
QString label = QString("%1, %2, %3").arg(s.h).arg(s.k).arg(s.l);
// Position slightly above the top side of the box
const qreal text_x = s.predicted_x - 5.5f;
const qreal text_y = s.predicted_y - 10.0f;
// Use QGraphicsSimpleTextItem for much better performance
auto *textItem = new QGraphicsSimpleTextItem(label);
textItem->setFont(font);
textItem->setBrush(pen_color);
textItem->setPos(text_x, text_y);
scene()->addItem(textItem);
addOverlayItem(textItem);
}
}
}
void JFJochDiffractionImage::DrawResolutionRings() {
if (ring_mode == RingMode::None)
return;
// Get the visible area in the scene coordinates
QRectF visibleRect = mapToScene(viewport()->geometry()).boundingRect();
int startX = std::max(0, static_cast<int>(std::floor(visibleRect.left())));
int endX = std::min(static_cast<int>(image->Dataset().experiment.GetXPixelsNum()),
static_cast<int>(std::ceil(visibleRect.right())));
int startY = std::max(0, static_cast<int>(std::floor(visibleRect.top())));
int endY = std::min(static_cast<int>(image->Dataset().experiment.GetYPixelsNum()),
static_cast<int>(std::ceil(visibleRect.bottom())));
auto geom = image->Dataset().experiment.GetDiffractionGeometry();
QColor ring_color = feature_color;
if (ring_mode == RingMode::IceRings) {
ring_color = ice_ring_color;
res_ring = QVector<float>{ICE_RING_RES_A.begin(), ICE_RING_RES_A.end()};
} else if (ring_mode == RingMode::Auto) {
float radius_x_0 = geom.GetBeamX_pxl() - startX;
float radius_x_1 = endX - geom.GetBeamX_pxl();
float radius_x = std::max(radius_x_0, radius_x_1);
float radius_y_0 = geom.GetBeamY_pxl() - startY;
float radius_y_1 = endY - geom.GetBeamY_pxl();
float radius_y = std::max(radius_y_0, radius_y_1);
float radius = std::min(radius_x, radius_y);
if (radius_x <= 0)
radius = radius_y;
if (radius_y <= 0)
radius = radius_x;
if (radius > 0)
res_ring = {
geom.PxlToRes(radius / 2.0f),
geom.PxlToRes(radius / 1.02f)
};
else
res_ring = {};
} else if (ring_mode == RingMode::Estimation) {
if (image
&& image->ImageData().resolution_estimate
&& std::isfinite(image->ImageData().resolution_estimate.value())
&& image->ImageData().resolution_estimate.value() > 0.0)
res_ring = {*image->ImageData().resolution_estimate};
else
res_ring = {};
}
if (res_ring.empty())
return;
QPen pen(ring_color, 5);
pen.setCosmetic(true);
QVector<qreal> dashPattern = {10, 15};
pen.setDashPattern(dashPattern);
float phi_offset = 0;
// Tracing the contours costs 361 geometry evaluations per ring, and they only move when the
// ring list or the geometry changes - not when the view is panned or zoomed, which is when
// most overlay rebuilds happen. Keep them until the ring list changes; loadImage() clears
// the cache so a new geometry re-traces.
if (ring_cache_key_ != res_ring) {
ring_cache_key_ = res_ring;
ring_cache_.clear();
float res1 = geom.PxlToRes(0,0);
float res2 = geom.PxlToRes(image->Dataset().experiment.GetXPixelsNum(),0);
float res3 = geom.PxlToRes(image->Dataset().experiment.GetXPixelsNum(),image->Dataset().experiment.GetYPixelsNum());
float res4 = geom.PxlToRes(0,image->Dataset().experiment.GetYPixelsNum());
float min_res = std::min({res1, res2, res3, res4});
for (const auto &d: res_ring) {
if (d < min_res)
continue;
// Trace the constant-d contour through the geometry - a circle on an untilted detector,
// a conic on a tilted one - the same way an azimuthal ROI arc is drawn, instead of
// approximating it with an axis-aligned bounding-box ellipse. ResPhiToPxl throws when d is
// too high for the wavelength, and returns NaN where the contour leaves the detector plane.
QPainterPath path;
bool started = false;
bool valid = true;
constexpr int steps = 360;
for (int i = 0; i <= steps; i++) {
const float phi = 2.0f * static_cast<float>(PI) * static_cast<float>(i) / static_cast<float>(steps);
try {
auto [x, y] = geom.ResPhiToPxl(d, phi);
if (!std::isfinite(x) || !std::isfinite(y)) {
started = false; // break the subpath where the ring leaves the detector
continue;
}
if (!started) { path.moveTo(x, y); started = true; }
else path.lineTo(x, y);
} catch (...) {
valid = false;
break;
}
}
if (!valid || path.isEmpty())
continue;
ring_cache_.push_back({d, path});
}
}
for (const auto &[d, path]: ring_cache_) {
addOverlayItem(scene()->addPath(path, pen));
// Place the "d Å" label at the first cardinal azimuth (staggered per ring) that is visible.
bool have_label = false;
QPointF label_pos;
for (float base : {0.0f, static_cast<float>(PI) / 2.0f,
static_cast<float>(PI), 3.0f * static_cast<float>(PI) / 2.0f}) {
try {
auto [x, y] = geom.ResPhiToPxl(d, phi_offset + base);
QPointF p(x, y);
if (std::isfinite(x) && std::isfinite(y) && visibleRect.contains(p)) {
label_pos = p;
have_label = true;
break;
}
} catch (...) {
break;
}
}
if (have_label) {
QFont font("Arial", 16);
const qreal f = std::clamp(scale_factor, 0.5, 50.0);
font.setPointSizeF(16.0 / sqrt(f)); // base 12pt around scale_factor ~10
auto *textItem = new QGraphicsSimpleTextItem(
QString("%1 Å").arg(QString::number(d, 'f', 2)));
textItem->setFont(font);
textItem->setBrush(ring_color);
textItem->setPos(label_pos);
scene()->addItem(textItem);
addOverlayItem(textItem);
}
phi_offset += 4.0 / 180.0 * PI;
}
}
void JFJochDiffractionImage::DrawBeamCenter() {
auto geom = image->Dataset().experiment.GetDiffractionGeometry();
auto [beam_x, beam_y] = geom.GetDirectBeam_pxl();
// + 0.5 as everywhere else in the overlay: our coordinates are pixel-centred, the scene's are
// pixel-cornered (pixel i covers [i, i+1)), so the cross would otherwise sit half a pixel off the
// spots and the image.
DrawCross(beam_x + 0.5f, beam_y + 0.5f, 25, 5, 2);
}
void JFJochDiffractionImage::DrawTopPixels() {
int i = 0;
for (const auto& p : image->GetTopPixels()) {
if (i >= show_highest_pixels)
break;
const int32_t idx = p.second;
DrawCross(idx % image->Dataset().experiment.GetXPixelsNum() + 0.5,
idx / image->Dataset().experiment.GetXPixelsNum() + 0.5, 15, 3);
i++;
}
}
void JFJochDiffractionImage::addCustomOverlay() {
DrawResolutionRings();
DrawROIs();
DrawTopPixels();
DrawBeamCenter();
if (show_spots)
DrawSpots();
if (show_predictions)
DrawPredictions();
if (show_saturation)
DrawSaturation();
}
void JFJochDiffractionImage::DrawROIs() {
if (!image)
return;
const auto &rois = image->Dataset().experiment.ROI().GetROIDefinition();
auto geom = image->Dataset().experiment.GetDiffractionGeometry();
// Distinct colours per ROI (shared with the ROI-list swatches via ROIAnnotationColor); loaded
// ROIs use solid lines (the interactively drawn scratch ROI keeps its dashed feature_color).
// TODO: align this palette with the ROI colours in the bottom-panel plots.
int color_index = 0;
auto fill_brush = [&](const QColor &c) {
return show_roi_fill ? QBrush(QColor(c.red(), c.green(), c.blue(), 60)) : QBrush(Qt::NoBrush);
};
auto draw_handle = [&](const QPointF &p, const QColor &c) {
const qreal s = 4.0 / std::sqrt(std::max(1e-4, scale_factor));
addOverlayItem(scene()->addRect(QRectF(p.x() - s, p.y() - s, 2 * s, 2 * s), QPen(c, 1), QBrush(c)));
};
for (const auto &b : rois.boxes) {
QColor c = ROIAnnotationColor(color_index++);
const bool selected = (QString::fromStdString(b.GetName()) == selected_roi_);
const bool editing = b.GetName() == edit_name_.toStdString()
&& (roi_edit_ == RoiEdit::MoveBox || roi_edit_ == RoiEdit::ResizeBox);
QPen pen(c, selected ? 3 : 2);
pen.setCosmetic(true);
if (selected) pen.setStyle(Qt::DashLine); // highlight the editable ROI
const QRectF rect = editing ? edit_box_
: QRectF(b.GetXMin(), b.GetYMin(), b.GetWidth(), b.GetHeight());
addOverlayItem(scene()->addRect(rect, pen, fill_brush(c)));
AddROILabel(b.GetName(), c, rect.left(), rect.top());
if (selected) {
draw_handle(rect.topLeft(), c); draw_handle(rect.topRight(), c);
draw_handle(rect.bottomLeft(), c); draw_handle(rect.bottomRight(), c);
draw_handle({rect.center().x(), rect.top()}, c);
draw_handle({rect.center().x(), rect.bottom()}, c);
draw_handle({rect.left(), rect.center().y()}, c);
draw_handle({rect.right(), rect.center().y()}, c);
}
}
for (const auto &c_roi : rois.circles) {
QColor c = ROIAnnotationColor(color_index++);
const bool selected = (QString::fromStdString(c_roi.GetName()) == selected_roi_);
const bool editing = c_roi.GetName() == edit_name_.toStdString()
&& (roi_edit_ == RoiEdit::MoveCircle || roi_edit_ == RoiEdit::ResizeCircle);
QPen pen(c, selected ? 3 : 2);
pen.setCosmetic(true);
if (selected) pen.setStyle(Qt::DashLine);
const QPointF center = editing ? edit_center_ : QPointF(c_roi.GetX(), c_roi.GetY());
const double r = editing ? edit_radius_ : c_roi.GetRadius_pxl();
addOverlayItem(scene()->addEllipse(center.x() - r, center.y() - r, 2 * r, 2 * r, pen, fill_brush(c)));
AddROILabel(c_roi.GetName(), c, center.x(), center.y());
if (selected) {
draw_handle({center.x() + r, center.y()}, c);
draw_handle({center.x() - r, center.y()}, c);
draw_handle({center.x(), center.y() + r}, c);
draw_handle({center.x(), center.y() - r}, c);
}
}
for (const auto &az_committed : rois.azimuthal) {
QColor c = ROIAnnotationColor(color_index++);
const bool selected = (QString::fromStdString(az_committed.GetName()) == selected_roi_);
const bool editing = az_committed.GetName() == edit_name_.toStdString()
&& (roi_edit_ == RoiEdit::AzimInner || roi_edit_ == RoiEdit::AzimOuter
|| roi_edit_ == RoiEdit::RotatePhiMin || roi_edit_ == RoiEdit::RotatePhiMax);
const ROIAzimuthal az = editing
? (edit_has_phi_ ? ROIAzimuthal(az_committed.GetName(), edit_d_min_, edit_d_max_, edit_phi_min_, edit_phi_max_)
: ROIAzimuthal(az_committed.GetName(), edit_d_min_, edit_d_max_))
: az_committed;
DrawAzimuthalROI(az, c, geom);
if (selected) {
QPointF inner, outer, pmin, pmax;
azimuthalHandles(az, geom, inner, outer, pmin, pmax);
draw_handle(inner, c);
draw_handle(outer, c);
if (az.HasPhi()) {
draw_handle(pmin, c);
draw_handle(pmax, c);
}
}
}
}
void JFJochDiffractionImage::AddROILabel(const std::string &name, const QColor &color, float px, float py) {
if (!show_roi_labels)
return;
// Just the name; per-ROI statistics are shown in the side-panel ROI list.
auto *text = scene()->addText(QString::fromStdString(name));
text->setDefaultTextColor(color);
text->setFlag(QGraphicsItem::ItemIgnoresTransformations); // constant on-screen size
text->setPos(px, py);
addOverlayItem(text);
}
void JFJochDiffractionImage::DrawAzimuthalROI(const ROIAzimuthal &az, const QColor &color,
const DiffractionGeometry &geom) {
const bool selected = (QString::fromStdString(az.GetName()) == selected_roi_);
QPen pen(color, selected ? 3 : 2); pen.setCosmetic(true);
if (selected) pen.setStyle(Qt::DashLine);
QBrush brush = show_roi_fill ? QBrush(QColor(color.red(), color.green(), color.blue(), 60))
: QBrush(Qt::NoBrush);
const float d_inner = az.GetDMax_A(); // larger d -> smaller radius
const float d_outer = az.GetDMin_A();
auto deg2rad = [](float d) { return d * static_cast<float>(PI) / 180.0f; };
// Sample the boundary through the geometry so the wedge matches the ROI footprint.
// ResPhiToPxl throws when the resolution is too high for the wavelength; skip such ROIs.
// move_to_start == true begins a new subpath (no connecting line); false continues
// the current one (used for the radial edge between a sector's outer and inner arc).
auto add_arc = [&](QPainterPath &path, float d, float phi_a, float phi_b, int steps, bool move_to_start) -> bool {
for (int i = 0; i <= steps; i++) {
float phi = phi_a + (phi_b - phi_a) * static_cast<float>(i) / static_cast<float>(steps);
try {
auto [px, py] = geom.ResPhiToPxl(d, phi);
if (move_to_start && i == 0)
path.moveTo(px, py);
else
path.lineTo(px, py);
} catch (...) { return false; }
}
return true;
};
QPainterPath path;
if (az.HasPhi()) {
float phi0 = deg2rad(az.GetPhiMin_deg());
float phi1 = deg2rad(az.GetPhiMax_deg());
if (phi1 < phi0) phi1 += 2.0f * static_cast<float>(PI); // unwrap the sector
int steps = std::max(8, static_cast<int>((phi1 - phi0) * 180.0f / static_cast<float>(PI) / 2.0f));
if (!add_arc(path, d_outer, phi0, phi1, steps, true)) return; // outer arc
if (!add_arc(path, d_inner, phi1, phi0, steps, false)) return; // inner arc; radial edges close it
path.closeSubpath();
} else {
path.setFillRule(Qt::OddEvenFill); // annulus: two concentric rings
const float two_pi = 2.0f * static_cast<float>(PI);
if (!add_arc(path, d_outer, 0, two_pi, 180, true)) return;
path.closeSubpath();
if (!add_arc(path, d_inner, 0, two_pi, 180, true)) return;
path.closeSubpath();
}
addOverlayItem(scene()->addPath(path, pen, brush));
if (show_roi_labels) {
try {
auto [px, py] = geom.ResPhiToPxl(d_outer, az.HasPhi() ? deg2rad(az.GetPhiMin_deg()) : 0.0f);
AddROILabel(az.GetName(), color, px, py);
} catch (...) {}
}
}
void JFJochDiffractionImage::showROILabels(bool input) {
show_roi_labels = input;
updateOverlay();
}
void JFJochDiffractionImage::showROIFill(bool input) {
show_roi_fill = input;
updateOverlay();
}
void JFJochDiffractionImage::setSelectedROI(QString name) {
selected_roi_ = name;
updateOverlay();
}
bool JFJochDiffractionImage::roiEditPress(const QPointF &scenePos) {
if (!image)
return false;
const auto &rois = image->Dataset().experiment.ROI().GetROIDefinition();
auto geom = image->Dataset().experiment.GetDiffractionGeometry();
const qreal tol = 6.0 / std::sqrt(std::max(1e-4, scale_factor));
auto start = [&](const std::string &name) {
edit_name_ = QString::fromStdString(name);
selected_roi_ = edit_name_;
move_last_ = scenePos;
emit roiSelected(edit_name_);
setCursor(Qt::ClosedHandCursor);
};
// Box: corners/edges resize, interior moves.
for (const auto &b : rois.boxes) {
const QRectF r(QPointF(b.GetXMin(), b.GetYMin()), QPointF(b.GetXMax(), b.GetYMax()));
const ResizeHandle h = hitTestBoxHandle(r, scenePos, tol);
if (h == ResizeHandle::None)
continue;
start(b.GetName());
edit_box_ = r;
if (h == ResizeHandle::Inside) {
roi_edit_ = RoiEdit::MoveBox;
} else {
roi_edit_ = RoiEdit::ResizeBox;
box_handle_ = h;
}
return true;
}
// Circle: perimeter resizes, interior moves.
for (const auto &c : rois.circles) {
const QPointF center(c.GetX(), c.GetY());
const double dist = QLineF(center, scenePos).length();
if (dist > c.GetRadius_pxl() + tol)
continue;
start(c.GetName());
edit_center_ = center;
edit_radius_ = c.GetRadius_pxl();
roi_edit_ = (std::abs(dist - c.GetRadius_pxl()) <= tol) ? RoiEdit::ResizeCircle : RoiEdit::MoveCircle;
return true;
}
// Azimuthal: grab one of the discrete handles to resize Q/d (inner/outer arc) or
// rotate a phi edge. Larger tolerance than the thin arcs would give.
const qreal tol_h = 9.0 / std::sqrt(std::max(1e-4, scale_factor));
for (const auto &az : rois.azimuthal) {
QPointF inner, outer, pmin, pmax;
azimuthalHandles(az, geom, inner, outer, pmin, pmax);
auto grab = [&](const QPointF &h) { return QLineF(h, scenePos).length() <= tol_h; };
RoiEdit mode = RoiEdit::None;
if (grab(inner)) mode = RoiEdit::AzimInner;
else if (grab(outer)) mode = RoiEdit::AzimOuter;
else if (az.HasPhi() && grab(pmin)) mode = RoiEdit::RotatePhiMin;
else if (az.HasPhi() && grab(pmax)) mode = RoiEdit::RotatePhiMax;
if (mode == RoiEdit::None)
continue;
start(az.GetName());
edit_d_min_ = az.GetDMin_A();
edit_d_max_ = az.GetDMax_A();
edit_has_phi_ = az.HasPhi();
edit_phi_min_ = az.GetPhiMin_deg();
edit_phi_max_ = az.GetPhiMax_deg();
roi_edit_ = mode;
return true;
}
// Inside an azimuthal ROI but not on a handle: select it and let the base pan
// (these ROIs are large and should not capture the panning gesture).
for (const auto &az : rois.azimuthal) {
const auto [bx, by] = geom.GetDirectBeam_pxl();
const double cursor_r = QLineF(QPointF(bx, by), scenePos).length();
const float phi = geom.Phi_rad(scenePos.x(), scenePos.y()) * 180.0f / static_cast<float>(PI);
if (cursor_r < geom.ResToPxl(az.GetDMax_A()) || cursor_r > geom.ResToPxl(az.GetDMin_A()))
continue;
if (az.HasPhi() && !InPhiSector(phi, az.GetPhiMin_deg(), az.GetPhiMax_deg()))
continue;
selected_roi_ = QString::fromStdString(az.GetName());
emit roiSelected(selected_roi_);
break;
}
return false;
}
void JFJochDiffractionImage::roiEditMove(const QPointF &scenePos) {
if (!image)
return;
auto geom = image->Dataset().experiment.GetDiffractionGeometry();
const auto [bx, by] = geom.GetDirectBeam_pxl();
const float cursor_r = QLineF(QPointF(bx, by), scenePos).length();
switch (roi_edit_) {
case RoiEdit::MoveBox:
edit_box_.translate(scenePos - move_last_);
move_last_ = scenePos;
break;
case RoiEdit::ResizeBox: {
QRectF r = edit_box_;
switch (box_handle_) {
case ResizeHandle::Left: r.setLeft(scenePos.x()); break;
case ResizeHandle::Right: r.setRight(scenePos.x()); break;
case ResizeHandle::Top: r.setTop(scenePos.y()); break;
case ResizeHandle::Bottom: r.setBottom(scenePos.y()); break;
case ResizeHandle::TopLeft: r.setTopLeft(scenePos); break;
case ResizeHandle::TopRight: r.setTopRight(scenePos); break;
case ResizeHandle::BottomLeft: r.setBottomLeft(scenePos); break;
case ResizeHandle::BottomRight: r.setBottomRight(scenePos); break;
default: break;
}
edit_box_ = r.normalized();
break;
}
case RoiEdit::MoveCircle:
edit_center_ += (scenePos - move_last_);
move_last_ = scenePos;
break;
case RoiEdit::ResizeCircle:
edit_radius_ = std::max(1.0, QLineF(edit_center_, scenePos).length());
break;
case RoiEdit::AzimInner:
edit_d_max_ = geom.PxlToRes(cursor_r);
break;
case RoiEdit::AzimOuter:
edit_d_min_ = geom.PxlToRes(cursor_r);
break;
case RoiEdit::RotatePhiMin:
edit_phi_min_ = geom.Phi_rad(scenePos.x(), scenePos.y()) * 180.0f / static_cast<float>(PI);
break;
case RoiEdit::RotatePhiMax:
edit_phi_max_ = geom.Phi_rad(scenePos.x(), scenePos.y()) * 180.0f / static_cast<float>(PI);
break;
default:
return; // None: select only, nothing to drag
}
updateOverlay();
// Live recompute, but keep at most one in flight (cleared in loadImage) so the
// worker is not flooded with edits faster than it can recompute them.
if (!live_pending_) {
live_pending_ = true;
emit roiGeometryEdited(BuildEditedROIDefinition());
}
}
void JFJochDiffractionImage::roiEditRelease() {
if (roi_edit_ == RoiEdit::None)
return;
const ROIDefinition rois = BuildEditedROIDefinition();
roi_edit_ = RoiEdit::None;
setCursor(Qt::ArrowCursor);
emit roiGeometryEdited(rois); // final, exact geometry
}
ROIDefinition JFJochDiffractionImage::BuildEditedROIDefinition() const {
ROIDefinition rois;
if (image)
rois = image->Dataset().experiment.ROI().GetROIDefinition();
const std::string sel = edit_name_.toStdString();
switch (roi_edit_) {
case RoiEdit::MoveBox:
case RoiEdit::ResizeBox:
for (auto &b : rois.boxes)
if (b.GetName() == sel) {
b = ROIBox(sel, std::lround(edit_box_.left()), std::lround(edit_box_.right()),
std::lround(edit_box_.top()), std::lround(edit_box_.bottom()));
break;
}
break;
case RoiEdit::MoveCircle:
case RoiEdit::ResizeCircle:
for (auto &c : rois.circles)
if (c.GetName() == sel) {
c = ROICircle(sel, edit_center_.x(), edit_center_.y(), edit_radius_);
break;
}
break;
case RoiEdit::AzimInner:
case RoiEdit::AzimOuter:
case RoiEdit::RotatePhiMin:
case RoiEdit::RotatePhiMax:
for (auto &a : rois.azimuthal)
if (a.GetName() == sel) {
a = edit_has_phi_
? ROIAzimuthal(sel, edit_d_min_, edit_d_max_, edit_phi_min_, edit_phi_max_)
: ROIAzimuthal(sel, edit_d_min_, edit_d_max_);
break;
}
break;
default:
break;
}
return rois;
}
void JFJochDiffractionImage::roiScratchDrawn() {
// The base just drew a scratch box/circle (roiBox/roi_type, in pixel coords);
// turn it into a new persistent ROI in the list.
if (!image || roiBox.isNull() || roiBox.width() <= 0 || roiBox.height() <= 0)
return;
ROIDefinition rois = image->Dataset().experiment.ROI().GetROIDefinition();
if (rois.boxes.size() + rois.circles.size() + rois.azimuthal.size() >= 16)
return;
std::set<std::string> used;
for (const auto &b : rois.boxes) used.insert(b.GetName());
for (const auto &c : rois.circles) used.insert(c.GetName());
for (const auto &a : rois.azimuthal) used.insert(a.GetName());
std::string name;
for (int i = 1; ; i++) {
name = "roi" + std::to_string(i);
if (!used.count(name)) break;
}
if (roi_type == RoiType::RoiBox) {
const QRectF r = roiBox.normalized();
rois.boxes.emplace_back(name, std::lround(r.left()), std::lround(r.right()),
std::lround(r.top()), std::lround(r.bottom()));
} else {
const QPointF c = roiBox.center();
const double rad = 0.5 * std::min(roiBox.width(), roiBox.height());
rois.circles.emplace_back(name, c.x(), c.y(), std::max(0.1, rad));
}
roiBox = QRectF(); // clear the scratch overlay
selected_roi_ = QString::fromStdString(name);
emit roiSelected(selected_roi_);
emit roiGeometryEdited(rois);
}
void JFJochDiffractionImage::keyPressEvent(QKeyEvent *event) {
// QGraphicsView would otherwise consume these to scroll the viewport; claim them first so they
// navigate the dataset instead, via the same stepImage() the navigation toolbar already listens
// to. Home/End step by an effectively infinite amount, which stepImage's clamp turns into
// "jump to the first/last image".
switch (event->key()) {
case Qt::Key_Home:
emit stepImage(std::numeric_limits<int>::min());
event->accept();
return;
case Qt::Key_End:
emit stepImage(std::numeric_limits<int>::max());
event->accept();
return;
case Qt::Key_PageUp:
emit stepImage(1);
event->accept();
return;
case Qt::Key_PageDown:
emit stepImage(-1);
event->accept();
return;
default:
break;
}
if (event->key() == Qt::Key_Delete && image && !selected_roi_.isEmpty()) {
ROIDefinition rois = image->Dataset().experiment.ROI().GetROIDefinition();
const std::string sel = selected_roi_.toStdString();
auto erase = [&sel](auto &vec) {
for (auto it = vec.begin(); it != vec.end(); ++it)
if (it->GetName() == sel) { vec.erase(it); return true; }
return false;
};
if (erase(rois.boxes) || erase(rois.circles) || erase(rois.azimuthal)) {
selected_roi_.clear();
emit roiGeometryEdited(rois);
}
event->accept();
return;
}
QGraphicsView::keyPressEvent(event);
}
std::optional<float> JFJochDiffractionImage::AutoForegroundValue() const {
if (!image)
return {};
if (!hdr_mode)
return static_cast<float>(image->GetAutoContrastValue());
const auto val_range = image->ValidMinMax();
if (!val_range.has_value())
return {};
return static_cast<float>(val_range->second);
}
void JFJochDiffractionImage::UpdateForeground() {
if (!image || !auto_fg)
return;
if (const auto val = AutoForegroundValue())
foreground = *val;
emit foregroundChanged(foreground);
}
void JFJochDiffractionImage::setHDRMode(bool input) {
hdr_mode = input;
UpdateForeground();
RenderImage();
Redraw();
}
void JFJochDiffractionImage::loadImage(std::shared_ptr<const JFJochReaderImage> in_image) {
live_pending_ = false; // a live ROI edit (if any) has now been recomputed
ring_cache_key_.clear(); // geometry may differ, re-trace the resolution rings
one_shot_auto_ = false; // a new image has its own auto value: `A` is a one-shot again
if (in_image) {
image = in_image;
UpdateForeground();
LoadImageInternal();
RenderImage();
Redraw();
} else {
image.reset();
W = 0; H = 0;
ClearFrame(); // followers (magnifier) must not keep showing the old frame
if (scene())
scene()->clear();
resetScenePointers();
hover_resolution = NAN;
DrawResolutionText();
}
}
void JFJochDiffractionImage::setAutoForeground(bool input) {
auto_fg = input;
one_shot_auto_ = false; // whatever `A` did before, the next press starts as a one-shot again
// If auto_foreground is not set, then view stays with the current settings till these are explicitly changed
UpdateForeground();
RenderImage();
Redraw();
emit autoForegroundChanged(auto_fg);
}
void JFJochDiffractionImage::oneShotAutoForeground() {
if (auto_fg)
return; // Auto already follows every image: there is nothing to apply, and nothing to undo
if (one_shot_auto_) {
setAutoForeground(true); // second press on the same image: keep it on from now on
return;
}
const auto val = AutoForegroundValue();
if (!val)
return;
// Unlike a manual foreground change this leaves auto_fg alone (it is off here either way).
foreground = *val;
one_shot_auto_ = true;
ScheduleRenderImage();
emit foregroundChanged(foreground);
}
void JFJochDiffractionImage::setResolutionRing(QVector<float> v) {
res_ring = v;
ring_mode = RingMode::Manual;
updateOverlay();
}
void JFJochDiffractionImage::showSpots(bool input) {
show_spots = input;
updateOverlay();
}
void JFJochDiffractionImage::showPredictions(bool input) {
show_predictions = input;
updateOverlay();
}
void JFJochDiffractionImage::setSpotColor(QColor input) {
spot_color = input;
updateOverlay();
}
void JFJochDiffractionImage::setPredictionColor(QColor input) {
prediction_color = input;
updateOverlay();
}
void JFJochDiffractionImage::showHighestPixels(int32_t v) {
show_highest_pixels = v;
updateOverlay();
}
void JFJochDiffractionImage::DrawSaturation() {
// Cull to the viewport like DrawSpots/DrawPredictions, and cap the count. Unlike spots, the
// saturated set is unbounded - an over-exposed frame or a missing beamstop saturates a
// sizeable fraction of the detector - and every cross is two QGraphicsLineItems rebuilt on
// each pan, zoom and frame change.
constexpr size_t max_crosses = 5000;
const QRectF visibleRect = mapToScene(viewport()->geometry()).boundingRect();
const auto x_pixels = image->Dataset().experiment.GetXPixelsNum();
size_t drawn = 0;
for (const auto &iter: image->SaturatedPixels()) {
const float x = iter % x_pixels + 0.5;
const float y = iter / x_pixels + 0.5;
if (!visibleRect.contains(QPointF{x, y}))
continue;
if (drawn++ >= max_crosses)
break;
DrawCross(x, y, 20, 4);
}
}
void JFJochDiffractionImage::DrawCross(float x, float y, float size, float width, float z) {
float sc_size = size / sqrt(scale_factor);
QPen pen(feature_color, width);
pen.setCosmetic(true);
QGraphicsLineItem *horizontalLine = scene()->addLine(x - sc_size, y, x + sc_size, y, pen);
QGraphicsLineItem *verticalLine = scene()->addLine(x, y - sc_size, x, y + sc_size, pen);
horizontalLine->setZValue(z); // Ensure it appears above other items
verticalLine->setZValue(z); // Ensure it appears above other items
addOverlayItem(horizontalLine);
addOverlayItem(verticalLine);
}
void JFJochDiffractionImage::showSaturation(bool input) {
show_saturation = input;
RenderImage();
updateOverlay();
}
void JFJochDiffractionImage::showBeamStop(bool input) {
show_beam_stop = input;
RenderImage();
updateOverlay();
}
void JFJochDiffractionImage::highlightIceRings(bool input) {
highlight_ice_rings = input;
updateOverlay();
}
void JFJochDiffractionImage::hideUnindexedSpots(bool input) {
hide_unindexed_spots = input;
updateOverlay();
}
void JFJochDiffractionImage::hideIceRingSpots(bool input) {
hide_ice_ring_spots = input;
updateOverlay();
}
void JFJochDiffractionImage::setResolutionRingMode(RingMode mode) {
ring_mode = mode;
updateOverlay();
}
static QFont HoverResolutionFont() {
QFont font("Arial");
font.setPixelSize(32); // big, constant size on screen
return font;
}
QString JFJochDiffractionImage::HoverResolutionLabel() const {
if (!image || !std::isfinite(hover_resolution) || hover_resolution <= 0.0f)
return {};
return QString("d = %1 \u00C5").arg(QString::number(hover_resolution, 'f', 2));
}
QString JFJochDiffractionImage::PixelLabel(int x, int y) const {
if (!image)
return {};
const int32_t v = image->Image()[static_cast<size_t>(y) * W + x];
if (v == GAP_PXL_VALUE)
return QStringLiteral("Gap");
if (v == ERROR_PXL_VALUE)
return QStringLiteral("Err");
if (v == BEAM_STOP_PXL_VALUE)
return QStringLiteral("Stop");
if (v == SATURATED_PXL_VALUE)
return QStringLiteral("Sat");
return QString::number(v);
}
void JFJochDiffractionImage::drawForeground(QPainter *painter, const QRectF &rect) {
JFJochImage::drawForeground(painter, rect);
const QString label = HoverResolutionLabel();
if (label.isEmpty())
return;
painter->save();
painter->resetTransform(); // lay the readout out in viewport pixels, not scene units
painter->setFont(HoverResolutionFont());
painter->setPen(feature_color);
painter->drawText(hover_text_rect_, Qt::AlignLeft | Qt::AlignTop, label);
painter->restore();
}
void JFJochDiffractionImage::scrollContentsBy(int dx, int dy) {
JFJochImage::scrollContentsBy(dx, dy);
if (hover_text_rect_.isEmpty())
return;
// QWidget::scroll moves the pending update region too, so the repaint DrawResolutionText asked for
// is dragged away from the corner along with the pixels already there. Dirty both places.
viewport()->update(hover_text_rect_.united(hover_text_rect_.translated(dx, dy)).adjusted(-2, -2, 2, 2));
}
void JFJochDiffractionImage::DrawResolutionText() {
const QRect previous = hover_text_rect_;
const QString label = HoverResolutionLabel();
if (label.isEmpty())
hover_text_rect_ = QRect();
else {
constexpr int margin_px = 10;
const QFontMetrics fm(HoverResolutionFont());
hover_text_rect_ = QRect(QPoint(margin_px, margin_px), fm.size(0, label));
}
// Repaint just the readout. The previous version was a QGraphicsItem flagged
// ItemIgnoresTransformations, which makes Qt mark the whole viewport dirty every time the
// item moves or its text changes - and it moved on every mouse motion.
const QRect dirty = previous.united(hover_text_rect_).adjusted(-2, -2, 2, 2);
if (!dirty.isEmpty())
viewport()->update(dirty);
}
void JFJochDiffractionImage::leaveEvent(QEvent *event) {
// Mouse left the view: clear hover resolution and hide text
if (std::isfinite(hover_resolution)) {
hover_resolution = NAN;
DrawResolutionText();
}
JFJochImage::leaveEvent(event);
}