"Only the refined pass is written" is true of the merged files and false of the
process file: with --no-merge or --write-process-h5 each pass writes its own, so
<prefix>_01_process.h5 is still there beside <prefix>_process.h5. Name the four
files that did go, and the one that did not.
Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Y5XisyYxmF8mUEQjzpMRe2