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Jungfraujoch/writer/HDF5DataFile.h
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v1.0.0-rc.146 (#56)
This is an UNSTABLE release. The release has significant modifications for data processing - in case of troubles go back to 1.0.0-rc.144.

jfjoch_process: Generate a dedicated file (_process.h5), which can be used as a replacement for the _master.h5 file for a reanalyzed dataset.
jfjoch_process: Improve the performance of scaling and merging, implement on the fly scaling.
jfjoch_writer: All final data analysis results are repopulated in the _master.h5 file.
jfjoch_scale: Dedicated tool for rescaling/merging existing data.
jfjoch_viewer: Fix bugs where pixel labels where displayed on a wrong pixel.

WARNING! Scaling and merging are experimental at the moment, and may not provide reasonable results for the time being.

Reviewed-on: #56
2026-05-28 18:48:35 +02:00

64 lines
1.6 KiB
C++

// SPDX-FileCopyrightText: 2024 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
// SPDX-License-Identifier: GPL-3.0-only
#ifndef HDF5DATAFILE_H
#define HDF5DATAFILE_H
#include <queue>
#include <string>
#include <chrono>
#include "HDF5Objects.h"
#include "../common/SpotToSave.h"
#include "../common/JFJochMessages.h"
#include "HDF5DataFilePlugin.h"
struct HDF5DataFileStatistics {
std::string filename;
uint64_t file_number; // counting from 1!
size_t max_image_number;
uint64_t total_images;
};
class HDF5DataFile {
const std::string filename;
const uint64_t file_number;
const bool write_images;
std::string tmp_filename;
std::shared_ptr<HDF5File> data_file = nullptr;
std::unique_ptr<HDF5DataSet> data_set = nullptr;
std::vector<std::unique_ptr<HDF5DataFilePlugin>> plugins;
size_t images_per_file;
size_t xpixel;
size_t ypixel;
size_t max_image_number;
size_t nimages;
std::string image_units;
std::vector<uint64_t> timestamp;
std::vector<uint32_t> exptime;
std::vector<uint64_t> number;
int32_t image_low;
bool closed = false;
bool overwrite = false;
bool new_file = true;
bool manage_file = false;
public:
HDF5DataFile(const StartMessage &msg, uint64_t file_number, const std::string &filename);
~HDF5DataFile();
std::optional<HDF5DataFileStatistics> Close();
void Write(const DataMessage& msg, uint64_t image_number);
size_t GetNumImages() const;
void CreateFile(const DataMessage& msg, std::shared_ptr<HDF5File> data_file);
};
#endif //HDF5DATAFILE_H