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Jungfraujoch/image_pusher/HDF5FilePusher.cpp
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v1.0.0-rc.146 (#56)
This is an UNSTABLE release. The release has significant modifications for data processing - in case of troubles go back to 1.0.0-rc.144.

jfjoch_process: Generate a dedicated file (_process.h5), which can be used as a replacement for the _master.h5 file for a reanalyzed dataset.
jfjoch_process: Improve the performance of scaling and merging, implement on the fly scaling.
jfjoch_writer: All final data analysis results are repopulated in the _master.h5 file.
jfjoch_scale: Dedicated tool for rescaling/merging existing data.
jfjoch_viewer: Fix bugs where pixel labels where displayed on a wrong pixel.

WARNING! Scaling and merging are experimental at the moment, and may not provide reasonable results for the time being.

Reviewed-on: #56
2026-05-28 18:48:35 +02:00

130 lines
4.4 KiB
C++

// SPDX-FileCopyrightText: 2024 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
// SPDX-License-Identifier: GPL-3.0-only
#include "HDF5FilePusher.h"
#include "../frame_serialize/CBORStream2Deserializer.h"
#include "../frame_serialize/CBORStream2Serializer.h"
HDF5FilePusher::HDF5FilePusher(const std::string &repub_address,
const std::optional<int32_t> &repub_watermark) {
if (!repub_address.empty()) {
repub_socket = std::make_unique<ZMQSocket>(ZMQSocketType::Push);
repub_socket->SendWaterMark(repub_watermark.value_or(default_repub_watermark));
repub_socket->SendTimeout(RepubTimeout);
repub_socket->Bind(repub_address);
}
}
void HDF5FilePusher::StartDataCollection(StartMessage &message) {
if (writer)
throw JFJochException(JFJochExceptionCategory::WrongDAQState, "Image pusher is already writing images");
writer = std::make_unique<FileWriter>(message);
writer_future = std::async(std::launch::async, &HDF5FilePusher::WriterThread, this);
images_written = 0;
if (repub_socket) {
try {
StartMessage repub_message = message;
repub_message.writer_notification_zmq_addr = "";
serializer.SerializeSequenceStart(repub_message);
repub_active = repub_socket->Send(serialization_buffer.data(), serializer.GetBufferSize(), true);
if (repub_active)
logger.Info("Republish active");
} catch (const JFJochException &e) {
logger.ErrorException(e);
}
}
}
bool HDF5FilePusher::EndDataCollection(const EndMessage &message) {
if (writer_future.valid()) {
writer_queue.PutBlocking({.end = true});
writer_future.get();
} else
throw JFJochException(JFJochExceptionCategory::WrongDAQState, "Image pusher wasn't writing files");
if (!writer)
throw JFJochException(JFJochExceptionCategory::WrongDAQState, "Image pusher not ready for writing images");
writer->WriteHDF5(message);
writer->Finalize();
writer.reset();
if (repub_socket) {
try {
serializer.SerializeSequenceEnd(message);
if (repub_active)
repub_socket->Send(serialization_buffer.data(), serializer.GetBufferSize(), true);
} catch (const JFJochException &e) {
logger.ErrorException(e);
}
if (repub_active)
logger.Info("Republish finished");
repub_active = false;
}
return true;
}
bool HDF5FilePusher::SendImage(const uint8_t *image_data, size_t image_size, int64_t image_number) {
if (!writer)
throw JFJochException(JFJochExceptionCategory::WrongDAQState, "Image pusher not ready for sending");
auto deserialized = CBORStream2Deserialize(image_data, image_size);
if (deserialized->data_message) {
writer->Write(*deserialized->data_message);
images_written++;
if (repub_socket && repub_active) {
try {
repub_socket->Send(image_data, image_size, false);
} catch (const JFJochException &e) {
logger.ErrorException(e);
}
}
} else
throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
"HDF5FilePusher::SendImage accepts only data image");
return true;
}
void HDF5FilePusher::SendImage(ZeroCopyReturnValue &z) {
writer_queue.PutBlocking(ImagePusherQueueElement{
.image_data = (uint8_t *) z.GetImage(),
.z = &z,
.end = false
});
}
bool HDF5FilePusher::SendCalibration(const CompressedImage &message) {
if (!writer)
throw JFJochException(JFJochExceptionCategory::WrongDAQState, "Image pusher not ready for sending");
writer->WriteHDF5(message);
return true;
}
void HDF5FilePusher::WriterThread() {
ImagePusherQueueElement e = writer_queue.GetBlocking();
while (!e.end) {
SendImage(e.image_data, e.z->GetImageSize(), e.z->GetImageNumber());
e.z->release();
e = writer_queue.GetBlocking();
}
}
std::string HDF5FilePusher::PrintSetup() const {
std::filesystem::path currentPath = std::filesystem::current_path();
return "HDF5FilePusher: Images are written directly to file in base directory " + currentPath.string();
}
std::optional<uint64_t> HDF5FilePusher::GetImagesWritten() const {
return images_written;
}
size_t HDF5FilePusher::GetConnectedWriters() const {
return 1;
}