jungfrauandClaude Opus 5
aceaf8b714
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A pass over the user-facing text against the code, after a day of changes. Almost all of it is deletion. The pre-pass files: RUGNUX.md promised them twice, CPU_DATA_ANALYSIS.md once, the usage line for --rotation-no-postrefine, the prose in the run report, a viewer tooltip and a comment in the anomalous script. They are not written any more, so the promises are gone and one is replaced by a sentence saying what the pre-pass is for and that it writes no merged files. CPU_DATA_ANALYSIS.md's account of decompression said two kernels do the work and, specifically, that the kernel stages nothing in shared memory and is therefore indifferent to the bitshuffle block size the file declares. Both halves stopped being true when the decode was fused into the preprocessing: it asks for the block as dynamic shared memory, and a block larger than 16 kB falls back to the old two-kernel route. That fallback is a behaviour a reader needs, so it is now described rather than contradicted. RUGNUX.md said spot finding, integration and scaling run on the CPU and scale with -N. Spot finding, preprocessing, azimuthal integration, prediction and Bragg integration are on the GPU, and rotation scaling and merging are GPU-resident too; that sentence now names what runs where. The -N row gains the per-GPU cap, and the usage line it is documenting gains it too - the usage message is the authority, so the two now agree. Deleted a promise of a per-iteration scaling file that nothing has written since the standalone scaling tool was removed. The changelog keeps four entries for today, cut back to what the house rules ask for: what changed, one line, no measurements or mechanism. The reproducibility entry now says MERGED intensities and says plainly that the azimuthal profile is not yet reproducible in the same way, which is what the code delivers - the corrected ring sums are still float atomics, and neither dropping the corrections (solid angle ramps 63% across the profile) nor widening them (the per-warp accumulators do not fit in shared memory at the bin counts in use) turned out to be a way to fix it. The review also turned up two defects in today's own code - the per-image cost line reported the thread count rather than the workers the loop actually ran, and the cap reached the azimuthal and calibration modes, whose worker preprocesses and integrates on the CPU and wants every thread it can have. Both are fixed in the preceding commit, which touches the same files. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_011n8riB6X59oRjkrSHzNPAU