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Jungfraujoch/image_analysis/geom_refinement/XtalOptimizer.h
2025-10-20 20:43:44 +02:00

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// SPDX-FileCopyrightText: 2025 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
// SPDX-License-Identifier: GPL-3.0-only
#ifndef JFJOCH_XTALOPTIMIZER_H
#define JFJOCH_XTALOPTIMIZER_H
#include <optional>
#include "../common/CrystalLattice.h"
#include "../common/DiffractionGeometry.h"
#include "../common/SpotToSave.h"
#include "gemmi/symmetry.hpp"
struct XtalOptimizerData {
DiffractionGeometry geom;
CrystalLattice latt;
gemmi::CrystalSystem crystal_system = gemmi::CrystalSystem::Triclinic;
int64_t min_spots = 8;
float min_length_A = 5.0;
float max_length_A = 500.0;
float min_angle_deg = 60.0f;
float max_angle_deg = 120.0f;
bool refine_beam_center = true;
// output
std::optional<double> beam_corr_x;
std::optional<double> beam_corr_y;
};
void LatticeToRodriguesAndLengths_GS(const CrystalLattice &latt, double rod[3], double lengths[3]);
void LatticeToRodriguesAndLengths_Hex(const CrystalLattice &latt, double rod[3], double ac[3]);
CrystalLattice AngleAxisAndLengthsToLattice(const double rod[3], const double lengths[3], bool hex = false);
bool XtalOptimizer(XtalOptimizerData &data, const std::vector<SpotToSave> &spots);
#endif //JFJOCH_XTALOPTIMIZER_H