Build Packages / build:rpm (rocky9_sls9) (push) Successful in 18m57s
Build Packages / Unit tests (push) Skipped
Build Packages / build:windows:nocuda (push) Successful in 16m55s
Build Packages / build:windows:cuda (push) Successful in 18m48s
Build Packages / build:viewer-tgz:cpu (push) Successful in 13m10s
Build Packages / build:viewer-tgz:cuda (push) Successful in 14m45s
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 22m23s
Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 20m12s
Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 23m7s
Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 20m43s
Build Packages / build:rpm (rocky8_sls9) (push) Successful in 23m9s
Build Packages / XDS test (durin plugin) (push) Successful in 12m26s
Build Packages / build:rpm (rocky9) (push) Successful in 24m58s
Build Packages / Generate python client (push) Successful in 50s
Build Packages / build:rpm (ubuntu2404) (push) Successful in 23m20s
Build Packages / Create release (push) Skipped
Build Packages / XDS test (JFJoch plugin) (push) Successful in 12m37s
Build Packages / build:rpm (rocky8) (push) Successful in 27m58s
Build Packages / build:rpm (ubuntu2204) (push) Successful in 25m38s
Build Packages / Build documentation (push) Successful in 59s
Build Packages / DIALS test (push) Successful in 23m16s
Build Packages / XDS test (neggia plugin) (push) Successful in 6m38s
**Files written by Jungfraujoch now import correctly in DIALS, XDS and pyFAI.** A tilted detector, a grid scan, a still recorded at a goniometer position, and saturated or unreadable pixels were each described in a way that a third-party program acted on wrongly. If you process Jungfraujoch data outside Jungfraujoch, prefer this release to any earlier one. * HDF5: the detector tilt (`rot1`/`rot2`/`rot3`) is exported correctly in the NXmx transformation chain; untilted geometries are unaffected. * HDF5: a still recorded at a goniometer position is no longer read back as a single image, and a grid scan records a stationary spindle so a program that requires a rotation axis can open it. * HDF5: the sample transformation chain is written in mounting order, with a Smargon head position told apart from the spindle, one entry per image, `module_offset` as a float unit vector, and `offset_units` on every offset. * HDF5: saturated, underloaded and unreadable pixels are described so a downstream program masks them - `saturation_value`, `underload_value`, `error_value` and `bit_depth_readout` are written correctly, and a data file missing next to a VDS master reads as the error marker rather than as zero counts. * HDF5: the rotation axis is read back under whatever name it carries, and `mirror_y` records whether the assembled image is mirrored in Y relative to the detector's raw readout. * A grid scan and a goniometer axis can both be set; they are no longer alternatives. * `images_per_file` is chosen from the acquisition when it is not given: a rotation sweep of at most 20000 images goes into a single data file, a grid scan splits on whole fast-axis rows, and stills and serial keep 1000. * The writer refuses a stream whose start message declares a different pixel format than its images carry, and a DECTRIS detector sending signed images is no longer declared unsigned. * The image stream can carry the sample transformation chain (`transformations`, in the END message); a producer that does not send it gets the same chain built by the writer. * rugnux: fixing the space group with `-S` no longer prevents the lattice from being found - a lattice indexed in a different setting is reindexed into that group's own setting, and a run whose crystal does not have that group's lattice stops and names the cell it indexed as, rather than reporting statistics that cannot describe it. * rugnux: the per-image resolution estimate now predicts the resolution the merged data reach rather than the highest-resolution spot found, and is reported as `SPOT_RESOLUTION_ESTIMATE`. * rugnux: two runs of the same command on the same images produce the same merged intensities; the azimuthal profile written alongside them is not yet reproducible in the same way. * rugnux: the offline lattice refinement is bounded by iterations rather than by a wall clock, so a loaded machine can no longer refine to a different lattice; a live acquisition keeps its real-time bound. * rugnux: the detector-frame modulation correction is fitted on a grid spanning the detector, so whether it is applied no longer depends on how far integration reached. * rugnux: the geometry pre-pass no longer writes `<prefix>_01.mtz`, `_01.cif`, `_01.hkl` and `_01_image.dat`; the refined second pass writes those files under `<prefix>`, and that is the result to use. * rugnux: `_process.h5` describes the pixel format of the images it links to, and is written on a thread of its own. * rugnux: the detector geometry is also logged in XDS's convention (`ORGX`/`ORGY`, detector axis vectors, rotation axis), so it can be compared with an XDS refinement. * rugnux: an image integrated in pyFAI through the `.poni` file written by `--mode calibration` comes out with the correct azimuth, and the file declares pyFAI's `orientation`, which needs pyFAI 2024.01 or newer. Radial integration is unchanged. * rugnux: a rotation run is substantially faster throughout - beam-stop detection, first-pass indexing, geometry refinement, integration, scaling and merging - and observations outside the scaling resolution range are dropped as they are ingested. The refined geometry, the space group chosen and the merged statistics are unchanged. * Faster spot finding and indexing, on the broker as well as in rugnux; the spots found and the lattices indexed are unchanged. * A run reserves substantially less GPU memory: nothing is allocated for buffers that are never read, and a worker builds only the engines it uses. * rugnux: with `-N` left at its default the per-image loop of `--mode mx` uses at most 16 workers per GPU, rather than one per hardware thread; an explicit `-N` is obeyed as given. * CUDA 12 builds now contain device code for Volta, so the RHEL 8 packages and the portable Linux `.tgz` run on a V100; the CUDA 13 artefacts (RHEL 9, Ubuntu, Windows) remain Turing and newer. * The build resolves a single Eigen for the whole project, and refuses to configure if Ceres picks up a different one; a build that mixed two Eigen versions was undefined behaviour and crashed at -O2. * Documentation: a security page, and the supported GPU generations and minimum NVIDIA driver version of every released artefact. **Breaking change to OpenAPI** - regenerate the client (`jfjoch-client` 1.0.0-rc.162, `frontend/src/client`): * `dataset_settings.images_per_file` is no longer `default: 1000` and no longer accepts `0`; it is optional, and its minimum is 1. A client sending `0` (previously "one file for the whole run") is now rejected - omit the field instead, which for a rotation sweep gives the same single file. * `file_writer_format` now defaults to `NXmxVDS`, matching the server's own default and the layout recommended for DIALS, XDS and CrystFEL. A generated client that fills in schema defaults and does not set the format explicitly will write VDS masters where it previously wrote legacy ones; set `NXmxLegacy` explicitly to keep them. --------- Co-authored-by: jungfrau <jungfrau@mx-aare-test.psi.ch> Reviewed-on: #72 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
116 lines
3.9 KiB
CMake
116 lines
3.9 KiB
CMake
ADD_EXECUTABLE(jfjoch_test
|
|
DiffractionExperimentTest.cpp
|
|
RawToConvertedGeometryTest.cpp
|
|
../common/RawToConvertedGeometry.h
|
|
../common/DiffractionExperiment.h
|
|
CheckImageOutput.h
|
|
FPGAIntegrationTest.cpp
|
|
StrongPixelSetTest.cpp
|
|
AdaptiveThresholdTest.cpp
|
|
AdaptiveSpotFinderCPUTest.cpp
|
|
ZSTDCompressorTest.cpp
|
|
FrameTransformationTest.cpp
|
|
HDF5WritingTest.cpp PedestalCalcTest.cpp
|
|
ZMQImagePusherTest.cpp StreamWriterTest.cpp
|
|
CoordTest.cpp JFJochStateMachineTest.cpp
|
|
JFJochReceiverIntegrationTest.cpp
|
|
AcquisitionCountersTest.cpp
|
|
IndexingUnitTest.cpp
|
|
ThreadSafeFIFOSetTest.cpp
|
|
FPGANetworkTest.cpp
|
|
JFPedestalTest.cpp
|
|
JFCalibrationTest.cpp
|
|
AzimuthalIntegrationTest.cpp
|
|
StatusVectorTest.cpp
|
|
CBORTest.cpp
|
|
DetectorGeometryTest.cpp DetectorSetupTest.cpp DiffractionGeometryTest.cpp
|
|
FPGASpotFindingUnitTest.cpp
|
|
PreviewCounterTest.cpp
|
|
FPGAFrameGeneratorTest.cpp
|
|
FPGAHostWriterTest.cpp
|
|
DiffractionSpotTest.cpp
|
|
TIFFTest.cpp
|
|
JFJochReceiverProcessingTest.cpp
|
|
JPEGTest.cpp
|
|
HistogramTest.cpp
|
|
ROIMapTest.cpp
|
|
ROIIntegrationCPUTest.cpp
|
|
ROIIntegrationGPUTest.cpp
|
|
BraggIntegrationEngineGPUTest.cpp
|
|
BraggIntegrationEngineCompressedImageTest.cpp
|
|
BraggStencilTest.cpp
|
|
LossyFilterTest.cpp
|
|
ImageBufferTest.cpp
|
|
PixelMaskTest.cpp
|
|
RegressionTest.cpp
|
|
FPGAHLSModulesTest.cpp
|
|
ZMQPreviewSocketTest.cpp
|
|
DetectorSettingsTest.cpp
|
|
AutoIncrVectorTest.cpp
|
|
ModuleSummationTest.cpp
|
|
ZMQMetadataSocketTest.cpp
|
|
JFJochReaderTest.cpp
|
|
ShadowFinderTest.cpp
|
|
ParallelForTest.cpp
|
|
RugnuxTest.cpp
|
|
ResultReportTest.cpp
|
|
RugnuxLargeTest.cpp
|
|
TestData.h
|
|
MovingAverageTest.cpp
|
|
ImageMetadataTest.cpp
|
|
JFJochReceiverLiteTest.cpp
|
|
GridScanSettingsTest.cpp
|
|
JFJochReceiverPlotsTest.cpp
|
|
GoniometerAxisTest.cpp
|
|
DetGeomCalibTest.cpp
|
|
RingsFromProfileTest.cpp
|
|
CalibrationTest.cpp
|
|
XtalOptimizerTest.cpp
|
|
CrystalLatticeTest.cpp
|
|
FPGAPTPTest.cpp
|
|
ResolutionShellsTest.cpp
|
|
ImageSpotFinderCPUTest.cpp
|
|
ImageSpotFinderGPUTest.cpp
|
|
BSLZ4DecoderGPUTest.cpp
|
|
BSLZ4DecoderGPUFuzzTest.cpp
|
|
ImagePreprocessorGPUFusedTest.cpp
|
|
AdaptiveSpotFinderGPUTest.cpp
|
|
SpotExtractorGPUParityTest.cpp
|
|
CalcBraggPredictionTest.cpp
|
|
SpotUtilsTest.cpp
|
|
LatticeSearchTest.cpp
|
|
TimeTest.cpp
|
|
RotationIndexerTest.cpp
|
|
TopPixelsTest.cpp
|
|
HKLKeyTest.cpp
|
|
TCPImagePusherTest.cpp
|
|
SearchSpaceGroupTest.cpp
|
|
SearchSpaceGroupTwinTest.cpp
|
|
SyntheticMergedReflections.h
|
|
XDSPluginTest.cpp
|
|
MergeScaleTest.cpp
|
|
RfreeFlagsTest.cpp
|
|
FrenchWilsonTest.cpp
|
|
ReindexAmbiguityTest.cpp
|
|
LoadReferenceMtzFreeFlagsTest.cpp
|
|
UnitCellTest.cpp
|
|
CCTest.cpp
|
|
MultiLatticeSearchTest.cpp
|
|
LatticeReductionTest.cpp
|
|
BeamCenterFromBackgroundTest.cpp
|
|
BeamCenterFromSpotsTest.cpp
|
|
)
|
|
|
|
target_link_libraries(jfjoch_test Catch2WithMain JFJochBroker JFJochReceiver JFJochReader JFJochStreamWriter
|
|
Rugnux JFJochImageAnalysis JFJochCommon JFJochHLSSimulation JFJochPreview
|
|
jfjoch_xds_plugin)
|
|
target_include_directories(jfjoch_test PRIVATE .)
|
|
|
|
find_package(Threads REQUIRED)
|
|
|
|
add_library(enospc_shim MODULE enospc_shim.c)
|
|
target_link_libraries(enospc_shim PRIVATE Threads::Threads dl)
|
|
set_target_properties(enospc_shim PROPERTIES PREFIX "" POSITION_INDEPENDENT_CODE ON) # remove "lib"
|
|
|
|
ADD_EXECUTABLE(jfjoch_hdf5_enospc_test jfjoch_hdf5_enospc_test.cpp)
|
|
target_link_libraries(jfjoch_hdf5_enospc_test Catch2WithMain JFJochWriter) |