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v1.0.0-rc.178 (#88)
* Rugnux: Processes serial crystallography data from XFELs - SACLA (MPCCD), PAL-XFEL and European XFEL (CXI), LCLS (XTC) and SwissFEL Alvra (JUNGFRAU with a CrystFEL module geometry) - with several files or Jungfraujoch master files merged in one run (`rugnux *_master.h5`).
* Rugnux: Stills processing takes a known unit cell and space group as a starting point, finds the beam centre (and, with a cell, the detector distance) from the images, detects the saturation level in other facilities' files and refines the placement of individual detector panels.
* Rugnux: The stills report gives R_split and CC1/2 from frame half-sets, comparable with CrystFEL.
* jfjoch_viewer: Opens the same XFEL file formats.
* Validation: A stills battery checks Rugnux against deposited structures from SACLA, PAL-XFEL, LCLS, European XFEL and SwissFEL.
* Rugnux: More reliable convergence of rotation scaling, and live molecular replacement starts as soon as the model is uploaded.
* jfjoch_broker: Initialize clears the previous dataset's bearer tokens, image buffer and live Rugnux status, and a slow CUDA JIT cache is reported at start.

Reviewed-on: #88
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
2026-10-21 11:20:01 +02:00

2.7 KiB

RugnuxLiveStatus

Live rugnux processing of the last collection; kept until the next collection starts or POST /initialize. Times are taken when the image puller received a message, and are in seconds since the first image (before it arrives, since now). The frame rate is (images_received - 1) / last_image_s.

Properties

Name Type Description Notes
state str
probe str Answer of the early lattice probe on the first 60 degrees; empty until it answers
probe_s float When the probe answered, since the first image [optional]
start_to_first_image_s float From the START message to the first image; set once the first image arrives [optional]
message str Why the run failed or was skipped
images_expected int
expected_collection_s float How long the collection is set up to take - images_expected times the image time; absent if not known [optional]
images_received int
elapsed_s float
step_progress float Fraction of the current pass's images [optional]
steps List[RugnuxLiveStep]
last_image_s float When the last image arrived, since the first image; set once the collection is over [optional]
cut str Empty, or why the analysis was cut: `deadline` (`deadline_s` after the last image) or `cancel` (`POST /cancel`). The end message then carried what was established at the cut. [optional]
cut_s float When the analysis was cut, since the first image [optional]
last_image_to_written_s float From the last image received to all results written [optional]
verdict str OK, WARNINGS, UNUSABLE or FAILED; empty until the run is over
verdict_text str
summary List[RugnuxSummaryRow]
warnings List[str]

Example

from jfjoch_client.models.rugnux_live_status import RugnuxLiveStatus

# TODO update the JSON string below
json = "{}"
# create an instance of RugnuxLiveStatus from a JSON string
rugnux_live_status_instance = RugnuxLiveStatus.from_json(json)
# print the JSON string representation of the object
print(RugnuxLiveStatus.to_json())

# convert the object into a dict
rugnux_live_status_dict = rugnux_live_status_instance.to_dict()
# create an instance of RugnuxLiveStatus from a dict
rugnux_live_status_from_dict = RugnuxLiveStatus.from_dict(rugnux_live_status_dict)

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