Jungfraujoch

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leonarski_fandClaude Opus 5.5 1ebb28e3ab Merge cytc-mr into rc175: molecular replacement decides an R-free tie between groups with as many copies on every reflection (paired, 3 standard errors), else UNDECIDED as before

Cytochrome C from its sequence-exact AlphaFold model now places in P 32 2 1; MR replay survey of 193
sets: UNDECIDED 7 -> 4, all three newly decided correctly, no wrong decision.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

2026-10-15 11:44:13 +02:00

images

Docs: battery report of the pushed rc.175, with commentary and figures

2026-10-09 16:38:23 +02:00

python_client

1.0.0-rc.175

2026-10-07 14:14:39 +02:00

ACKNOWLEDGEMENT.md

Merge timing-bench into rc175: battery.py timing, a three-set benchmark (myoglobin and cytochrome C from AlphaFold DB models, 4nwv from a moved deposited model) placed by molecular replacement, checked and timed per step

2026-10-15 09:25:34 +02:00

BATTERY_REPORT.md

Docs: battery report of the pushed rc.175, with commentary and figures

2026-10-09 16:38:23 +02:00

CBOR.md

v1.0.0-rc.173 (#83 )

2026-09-29 15:57:32 +02:00

CHANGELOG.md

CHANGELOG: rc.175 gains a jfjoch_writer line for the writer-end-catch work

2026-10-13 13:30:21 +02:00

conf.py

1.0.0-rc.175

2026-10-07 14:14:39 +02:00

CPU_DATA_ANALYSIS_DECISIONS.md

Model validation: budget counts only what is really held; fewer extra engines

2026-10-15 09:56:15 +02:00

CPU_DATA_ANALYSIS_IMAGE.md

docs: the min-pix 1 search gate is de novo only

2026-10-14 14:59:04 +02:00

CPU_DATA_ANALYSIS_INDEXING.md

MR score-engine cache and merge buffers: no hang, no doubled wait; near-tie doc follows offline decide-late

2026-10-13 21:25:15 +02:00

CPU_DATA_ANALYSIS_INTEGRATION.md

rugnux: drop the P1 cross-check; --finalist-ledger makes its own P1 merge

2026-10-07 19:04:40 +02:00

CPU_DATA_ANALYSIS.md

docs: bring the rugnux and analysis pages up to the code (MR fallback, GPU decode, live runs)

2026-10-13 09:03:31 +02:00

DEPLOYMENT.md

v1.0.0-rc.173 (#83 )

2026-09-29 15:57:32 +02:00

DETECTOR_GEOMETRY.md

v1.0.0-rc.171 (#81 )

2026-09-17 14:42:52 +02:00

DETECTORS.md

v1.0.0-rc.171 (#81 )

2026-09-17 14:42:52 +02:00

EXTERNAL_TEST_DATA.md

battery: add five large-cell sets to the open arm

2026-10-09 20:31:28 +02:00

FPGA_DATA_ANALYSIS.md

v1.0.0-rc.171 (#81 )

2026-09-17 14:42:52 +02:00

FPGA_DESIGN.md

v1.0.0-rc.171 (#81 )

2026-09-17 14:42:52 +02:00

FPGA_LICENSE.md

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

FPGA_NETWORK.md

v1.0.0-rc.171 (#81 )

2026-09-17 14:42:52 +02:00

FPGA_PCIE_DRIVER.md

v1.0.0-rc.171 (#81 )

2026-09-17 14:42:52 +02:00

FPGA_SETTINGS.md

v1.0.0-rc.171 (#81 )

2026-09-17 14:42:52 +02:00

FPGA.md

v1.0.0-rc.171 (#81 )

2026-09-17 14:42:52 +02:00

GPU_DATA_ANALYSIS.md

RESULT-CHANGING (owner approved, ulp level): Metal profile fit, CPU Gaussian from a shared exp

2026-10-15 08:18:43 +02:00

HARDWARE.md

v1.0.0-rc.171 (#81 )

2026-09-17 14:42:52 +02:00

HDF5.md

v1.0.0-rc.173 (#83 )

2026-09-29 15:57:32 +02:00

IMAGE_STREAM.md

v1.0.0-rc.171 (#81 )

2026-09-17 14:42:52 +02:00

index.rst

Merge rc175 into review-fixes-rc175

2026-10-13 13:30:00 +02:00

JFJOCH_BROKER.md

Broker: a collection can be followed from /start, its start message comes in the event stream

2026-10-08 17:03:09 +02:00

JFJOCH_VIEWER.md

macOS: sign jfjoch_viewer and rugnux with a Developer ID and notarize them

2026-10-14 15:01:30 +02:00

JFJOCH_WRITER.md

Writer: received images live in a byte-bounded ring buffer until written and republished

2026-10-13 12:51:34 +02:00

jfjoch.png

v1.0.0-rc.110 (#16 )

2025-11-28 12:47:35 +01:00

LICENSE.md

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

NAMING.md

v1.0.0-rc.157 (#67 )

2026-07-11 07:19:11 +02:00

OPENAPI_SPECS.rst

version 1.0.0-rc.27

2024-12-02 21:17:14 +01:00

OPENAPI.md

v1.0.0-rc.173 (#83 )

2026-09-29 15:57:32 +02:00

PIXEL_MASK.md

v1.0.0-rc.173 (#83 )

2026-09-29 15:57:32 +02:00

PYTHON_CLIENT.md

v1.0.0-rc.173 (#83 )

2026-09-29 15:57:32 +02:00

RELEASE_CONTENTS.md

macOS: sign jfjoch_viewer and rugnux with a Developer ID and notarize them

2026-10-14 15:01:30 +02:00

REPOSITORIES.md

v1.0.0-rc.171 (#81 )

2026-09-17 14:42:52 +02:00

requirements.txt

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

RUGNUX_ADVANCED.md

Merge commit '86f17740f' into stillsidx

2026-10-14 13:41:39 +02:00

RUGNUX_CALIBRATION.md

v1.0.0-rc.171 (#81 )

2026-09-17 14:42:52 +02:00

RUGNUX_FORMATS.md

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

RUGNUX_INSTALL.md

macOS: sign jfjoch_viewer and rugnux with a Developer ID and notarize them

2026-10-14 15:01:30 +02:00

RUGNUX_INTEGRATION.md

docs: --model places by rigid body, then molecular replacement; --mr; <prefix>_mr files

2026-10-13 08:07:44 +02:00

RUGNUX_MODEL_AND_REFERENCE.md

docs: Models and reference data - what a model or reference can and cannot change

2026-10-13 09:05:18 +02:00

RUGNUX_OVERVIEW.md

docs: bring the rugnux and analysis pages up to the code (MR fallback, GPU decode, live runs)

2026-10-13 09:03:31 +02:00

RUGNUX_REPORT.md

Molecular replacement: an R-free tie between groups with as many copies decided on every reflection

2026-10-15 11:43:33 +02:00

RUGNUX_TUTORIAL.md

Merge branch 'plots-disposition' into rc175: <prefix>_plot.txt gains a per-frame disposition column (1 merged, 0.5 downgraded, 0 rejected)

2026-10-13 15:44:34 +02:00

RUGNUX.md

Merge rc175 into review-fixes-rc175

2026-10-13 13:30:00 +02:00

SECURITY.md

Broker: a collection can be followed from /start, its start message comes in the event stream

2026-10-08 17:03:09 +02:00

SOFTWARE_INTEGRATION.md

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

SOFTWARE.md

viewer: cpp-httplib + Mbed TLS instead of libcurl for the broker client

2026-10-07 21:16:04 +02:00

TESTS.md

v1.0.0-rc.172 (#82 )

2026-09-22 06:48:37 +02:00

THIRD_PARTY_NOTICES.md

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

TOOLS.md

v1.0.0-rc.171 (#81 )

2026-09-17 14:42:52 +02:00

VERSIONING.md

v1.0.0-rc.171 (#81 )

2026-09-17 14:42:52 +02:00

WEB_FRONTEND.md

v1.0.0-rc.173 (#83 )

2026-09-29 15:57:32 +02:00