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leonarski_fandClaude Opus 4.8 a43f9bda13 Remove non-helping stills merge/scaling knobs 
Trims three opt-in stills parameters that did not improve data quality on the
external-reference (PDB R-free) battery and only added code:

- --partiality-uncertainty: the (1-p)/p merge-sigma term was null on KR2/OCP/
  NmHR/CTX vs their reference structures (and neutral-to-harmful at higher
  coefficients); removed the flag, setting and CorrectedSigma term.
- --stills-modulation: the detector-plane flat-field surface was net-negative
  on flooded data; removed the flag, setting and MergeOnTheFly::RefineModulation
  (the rotation modulation in RotationScaleMerge is unaffected).
- --min-indexed-fraction: every value other than the 0.20 default collapsed
  CC1/2; removed the override flag/setter, keeping the fixed 0.20 acceptance
  floor.

Default behaviour is unchanged (all three were off / at their default).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-25 17:40:48 +02:00
..
ADUHistogram.cpp
v1.0.0-rc.153 (#63)
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ADUHistogram.h
v1.0.0-rc.153 (#63)
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AutoIncrVector.h
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
AzimuthalIntegrationMapping.cpp
v1.0.0-rc.153 (#63)
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AzimuthalIntegrationMapping.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
AzimuthalIntegrationProfile.cpp
v1.0.0-rc.156 (#66)
2026-07-03 19:18:56 +02:00
AzimuthalIntegrationProfile.h
v1.0.0-rc.156 (#66)
2026-07-03 19:18:56 +02:00
AzimuthalIntegrationSettings.cpp
v1.0.0-rc.152 (#62)
2026-06-17 20:36:24 +02:00
AzimuthalIntegrationSettings.h
v1.0.0-rc.156 (#66)
2026-07-03 19:18:56 +02:00
BraggIntegrationSettings.cpp
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
BraggIntegrationSettings.h
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
BrokerStatus.h
v1.0.0-rc.129 (#36)
2026-03-05 22:13:12 +01:00
CheckPath.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
CMakeLists.txt
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ColorScale.cpp
v1.0.0-rc.124 (#31)
2026-02-01 13:29:33 +01:00
ColorScale.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
CompressedImage.cpp
v1.0.0-rc.40
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CompressedImage.h
v1.0.0-rc.148 (#58)
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Coord.cpp
v1.0.0-rc.153 (#63)
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Coord.h
v1.0.0-rc.148 (#58)
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CorrelationCoefficient.cpp
v1.0.0-rc.146 (#56)
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CorrelationCoefficient.h
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
CrystalLattice.cpp
v1.0.0-rc.153 (#63)
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CrystalLattice.h
v1.0.0-rc.148 (#58)
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CUDAWrapper.cpp
v1.0.0-rc.153 (#63)
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CUDAWrapper.cu
v1.0.0-rc.153 (#63)
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CUDAWrapper.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
DarkMaskSettings.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
DarkMaskSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DatasetSettings.cpp
v1.0.0-rc.158 (#68)
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DatasetSettings.h
v1.0.0-rc.158 (#68)
2026-07-12 19:42:29 +02:00
Definitions.h
v1.0.0-rc.156 (#66)
2026-07-03 19:18:56 +02:00
DetectorGeometry.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorGeometryFixed.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
DetectorGeometryFixed.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorGeometryModular.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
DetectorGeometryModular.h
v1.0.0-rc.148 (#58)
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DetectorModuleGeometry.cpp
v1.0.0-rc.103 (#8)
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DetectorModuleGeometry.h
v1.0.0-rc.148 (#58)
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DetectorSettings.cpp
v1.0.0-rc.139 (#49)
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DetectorSettings.h
v1.0.0-rc.148 (#58)
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DetectorSetup.cpp
v1.0.0-rc.153 (#63)
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DetectorSetup.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
DiffractionExperiment.cpp
v1.0.0-rc.160 (#70)
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DiffractionExperiment.h
v1.0.0-rc.158 (#68)
2026-07-12 19:42:29 +02:00
DiffractionGeometry.cpp
v1.0.0-rc.158 (#68)
2026-07-12 19:42:29 +02:00
DiffractionGeometry.h
v1.0.0-rc.158 (#68)
2026-07-12 19:42:29 +02:00
DiffractionSpot.cpp
Remove --soft-weight and --local-snr spot-finder options
2026-07-25 17:31:35 +02:00
DiffractionSpot.h
Remove --soft-weight and --local-snr spot-finder options
2026-07-25 17:31:35 +02:00
FileWriterSettings.cpp
v1.0.0-rc.160 (#70)
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FileWriterSettings.h
v1.0.0-rc.148 (#58)
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GitInfo.cpp.in
version 1.0.0-rc.25
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GitInfo.h
v1.0.0-rc.148 (#58)
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GoniometerAxis.cpp
v1.0.0-rc.153 (#63)
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GoniometerAxis.h
v1.0.0-rc.148 (#58)
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GridScanSettings.cpp
v1.0.0-rc.104 (#9)
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GridScanSettings.h
v1.0.0-rc.148 (#58)
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Histogram.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
hkl_key.h
v1.0.0-rc.124 (#31)
2026-02-01 13:29:33 +01:00
ImageBuffer.cpp
v1.0.0-rc.153 (#63)
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ImageBuffer.h
v1.0.0-rc.148 (#58)
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ImageFormatSettings.cpp
v1.0.0-rc.139 (#49)
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ImageFormatSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
IndexingSettings.cpp
Remove non-helping stills merge/scaling knobs
2026-07-25 17:40:48 +02:00
IndexingSettings.h
Remove non-helping stills merge/scaling knobs
2026-07-25 17:40:48 +02:00
InstrumentMetadata.cpp
version 1.0.0-rc.27
2024-12-02 21:17:14 +01:00
InstrumentMetadata.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
JFJochException.h
v1.0.0-rc.157 (#67)
2026-07-11 07:19:11 +02:00
JFJochMath.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
JFJochMessages.h
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
JFJochReceiverPlots.cpp
v1.0.0-rc.156 (#66)
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JFJochReceiverPlots.h
v1.0.0-rc.156 (#66)
2026-07-03 19:18:56 +02:00
JfjochTCP.h
v1.0.0-rc.158 (#68)
2026-07-12 19:42:29 +02:00
Logger.cpp
v1.0.0-rc.82
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Logger.h
v1.0.0-rc.148 (#58)
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ModuleSummation.cpp
v1.0.0-rc.135 (#44)
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ModuleSummation.h
v1.0.0-rc.148 (#58)
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MovingAverage.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
MovingAverage.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
MultiLinePlot.cpp
v1.0.0-rc.40
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MultiLinePlot.h
v1.0.0-rc.148 (#58)
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NetworkAddressConvert.cpp
v1.0.0-rc.153 (#63)
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NetworkAddressConvert.h
v1.0.0-rc.148 (#58)
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PixelMask.cpp
v1.0.0-rc.153 (#63)
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PixelMask.h
v1.0.0-rc.153 (#63)
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Plot.h
v1.0.0-rc.156 (#66)
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print_license.h
v1.0.0-rc.148 (#58)
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RawToConvertedGeometry.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
RawToConvertedGeometryCore.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
Reflection.h
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
ResolutionShells.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
ResolutionShells.h
v1.0.0-rc.148 (#58)
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ROIAzimuthal.cpp
v1.0.0-rc.153 (#63)
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ROIAzimuthal.h
v1.0.0-rc.153 (#63)
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ROIBox.cpp
v1.0.0-rc.153 (#63)
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ROIBox.h
v1.0.0-rc.153 (#63)
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ROICircle.cpp
v1.0.0-rc.153 (#63)
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ROICircle.h
v1.0.0-rc.153 (#63)
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ROIDefinition.cpp
version 1.0.0-rc.29
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ROIDefinition.h
v1.0.0-rc.148 (#58)
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ROIElement.cpp
v1.0.0-rc.153 (#63)
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ROIElement.h
v1.0.0-rc.153 (#63)
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ROIMap.cpp
v1.0.0-rc.153 (#63)
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ROIMap.h
v1.0.0-rc.148 (#58)
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ScalingSettings.cpp
Remove non-helping stills merge/scaling knobs
2026-07-25 17:40:48 +02:00
ScalingSettings.h
Remove non-helping stills merge/scaling knobs
2026-07-25 17:40:48 +02:00
ScanResult.cpp
v1.0.0-rc.44
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ScanResult.h
v1.0.0-rc.156 (#66)
2026-07-03 19:18:56 +02:00
ScanResultGenerator.cpp
v1.0.0-rc.157 (#67)
2026-07-11 07:19:11 +02:00
ScanResultGenerator.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
SpotToSave.cpp
v1.0.0-rc.72
2025-09-08 20:28:59 +02:00
SpotToSave.h
Remove --soft-weight and --local-snr spot-finder options
2026-07-25 17:31:35 +02:00
StatusVector.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
StatusVector.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ThreadSafeFIFO.h
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
time_utc.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
TopPixels.cpp
v1.0.0-rc.121 (#28)
2025-12-12 21:24:20 +01:00
TopPixels.h
v1.0.0-rc.148 (#58)
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UnitCell.cpp
v1.0.0-rc.146 (#56)
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UnitCell.h
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
XrayFluorescenceSpectrum.cpp
v1.0.0-rc.81
2025-09-21 19:27:51 +02:00
XrayFluorescenceSpectrum.h
v1.0.0-rc.148 (#58)
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ZeroCopyReturnValue.cpp
v1.0.0-rc.128 (#35)
2026-03-03 22:24:44 +01:00
ZeroCopyReturnValue.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ZMQWrappers.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
ZMQWrappers.h
v1.0.0-rc.148 (#58)
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