Update CPU_DATA_ANALYSIS.md for the new merge/analysis capabilities:
- §10.7 R-free test-set flags: Friedel-merged Laue-ASU key (Bijvoet-safe),
deterministic splitmix64 selection, resolution stratification;
- §10.8 French-Wilson amplitudes: posterior-mean |F| from I and sigma with the
Wilson prior (centric/acentric, epsilon multiplicity, strong-reflection
short-circuit), written as MTZ F/SIGF and mmCIF F_meas_au;
- §14 model-based validation (rugnux --model): Fcalc, flat bulk solvent + overall
and per-shell scaling, R-work/R-free vs a model, and 2Fo-Fc / Fo-Fc maps.
Also refresh the scope list and references, and correct the old "intensities only"
note (the output now carries amplitudes too).
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
leonarski_fandClaude Opus 4.8
97e6d99d03
