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leonarski_fandClaude Opus 4.8 4a5028d98d rugnux: add -r multi geometry refinement (per-image best of three) 
Per-image geometry refinement is a tradeoff that flips per dataset: beam+cell refinement
extends OCP merge quality but DIVERGES on sparse-spot stills (e.g. KR2's ~20 spots around a
232 A axis), pushing good lattices out of tolerance so they fail the acceptance floor.
`-r multi` runs all three (none / orientation / beam_and_lattice) on a copy per image and
keeps whichever indexes the most spots (scorer = fractional-Miller-within-tolerance count,
mirroring AnalyzeIndexing); ties prefer less refinement, to avoid overfitting the sparse list.

Validated: KR2 index 7.08% (-r beam_and_lattice default) -> 10.05% (matches the -r none best),
while OCP R-free stays ~equal to beam_and_lattice. New GeomRefinementAlgorithmEnum::Multi handled
in the CLI/HDF5/command-line echoes; the API convert maps it to beam_and_lattice (offline only).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-07-14 12:04:32 +02:00
..
ADUHistogram.cpp
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ADUHistogram.h
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AutoIncrVector.h
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AzimuthalIntegrationMapping.cpp
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AzimuthalIntegrationMapping.h
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AzimuthalIntegrationProfile.cpp
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AzimuthalIntegrationProfile.h
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AzimuthalIntegrationSettings.cpp
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AzimuthalIntegrationSettings.h
v1.0.0-rc.156 (#66)
2026-07-03 19:18:56 +02:00
BraggIntegrationSettings.cpp
rugnux: add opt-in stills partiality (--still-partiality)
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BraggIntegrationSettings.h
rugnux: add opt-in stills partiality (--still-partiality)
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BrokerStatus.h
v1.0.0-rc.129 (#36)
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CheckPath.h
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CMakeLists.txt
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ColorScale.cpp
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ColorScale.h
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CompressedImage.cpp
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CompressedImage.h
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Coord.cpp
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Coord.h
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CorrelationCoefficient.cpp
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CorrelationCoefficient.h
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CrystalLattice.cpp
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CrystalLattice.h
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CUDAWrapper.cpp
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CUDAWrapper.cu
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CUDAWrapper.h
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DarkMaskSettings.cpp
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DarkMaskSettings.h
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DatasetSettings.cpp
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DatasetSettings.h
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Definitions.h
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DetectorGeometry.h
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DetectorGeometryFixed.cpp
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DetectorGeometryFixed.h
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DetectorGeometryModular.cpp
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DetectorGeometryModular.h
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DetectorModuleGeometry.cpp
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DetectorModuleGeometry.h
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DetectorSettings.cpp
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DetectorSettings.h
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DetectorSetup.cpp
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DetectorSetup.h
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DiffractionExperiment.cpp
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DiffractionExperiment.h
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DiffractionGeometry.cpp
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DiffractionGeometry.h
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DiffractionSpot.cpp
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DiffractionSpot.h
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FileWriterSettings.cpp
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FileWriterSettings.h
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GitInfo.cpp.in
version 1.0.0-rc.25
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GitInfo.h
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GoniometerAxis.cpp
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GoniometerAxis.h
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GridScanSettings.cpp
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GridScanSettings.h
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Histogram.h
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hkl_key.h
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ImageBuffer.cpp
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ImageBuffer.h
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ImageFormatSettings.cpp
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ImageFormatSettings.h
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IndexingSettings.cpp
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IndexingSettings.h
rugnux: add -r multi geometry refinement (per-image best of three)
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InstrumentMetadata.cpp
version 1.0.0-rc.27
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InstrumentMetadata.h
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JFJochException.h
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JFJochMath.h
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JFJochMessages.h
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JFJochReceiverPlots.cpp
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JFJochReceiverPlots.h
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JfjochTCP.h
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Logger.cpp
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Logger.h
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ModuleSummation.cpp
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ModuleSummation.h
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MovingAverage.cpp
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MovingAverage.h
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MultiLinePlot.cpp
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MultiLinePlot.h
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NetworkAddressConvert.cpp
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NetworkAddressConvert.h
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PixelMask.cpp
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PixelMask.h
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Plot.h
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print_license.h
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RawToConvertedGeometry.h
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RawToConvertedGeometryCore.h
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Reflection.h
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ResolutionShells.cpp
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ResolutionShells.h
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ROIAzimuthal.cpp
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ROIAzimuthal.h
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ROIBox.cpp
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ROIBox.h
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ROICircle.cpp
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ROICircle.h
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ROIDefinition.cpp
version 1.0.0-rc.29
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ROIDefinition.h
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ROIElement.cpp
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ROIElement.h
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ROIMap.cpp
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ROIMap.h
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ScalingSettings.cpp
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ScalingSettings.h
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ScanResult.cpp
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ScanResult.h
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ScanResultGenerator.cpp
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ScanResultGenerator.h
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SpotToSave.cpp
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SpotToSave.h
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StatusVector.cpp
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StatusVector.h
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ThreadSafeFIFO.h
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time_utc.h
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TopPixels.cpp
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TopPixels.h
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UnitCell.cpp
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UnitCell.h
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XrayFluorescenceSpectrum.cpp
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XrayFluorescenceSpectrum.h
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ZeroCopyReturnValue.cpp
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ZeroCopyReturnValue.h
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ZMQWrappers.cpp
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ZMQWrappers.h
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