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This is an UNSTABLE release. It includes many experimental features, as well as many AI generated fixes. We recommend using rc.152 for production use. * rugnux: Rebrand the offline data-processing subsystem as `rugnux` and consolidate all offline analysis into the single `rugnux` binary - `jfjoch_process` is now `rugnux`, the former `jfjoch_azint` is now `rugnux --azint-only`, and `jfjoch_scale` is now `rugnux --scale` (see the new docs/NAMING.md and docs/RUGNUX.md). Scaling and merging are on by default for rotation and stills (`--no-merge` disables them), replacing the previous opt-in `-M, --scale-merge`. * rugnux: CLI fixes - default `-N` to all hardware threads, parse numeric option arguments strictly (reject non-numeric or trailing input instead of silently yielding 0), require `--wavelength > 0`, and correct the reproduced command line and `--scale` reference-cell handling. * rugnux: De-novo space-group improvements - recover genuine high symmetry and centred Bravais lattices from intensities, add an automatic CC1/2 high-resolution cutoff, and report L-test twinning statistics. * rugnux: Index weakly-diffracting low-resolution rotation data that previously failed (e.g. F-cubic crystals that diffract only to ~4 A on a detector reaching ~1.5 A). The per-frame indexing gate now measures the indexed fraction only within the resolution range the lattice actually diffracts to, so the many sub-diffraction ice/noise spots no longer make the fraction floor unreachable; the two-pass first pass tries several image-sampling schemes (spread across the whole rotation vs a consecutive wedge whose native stride keeps a reflection's rocking curve continuous, letting the FFT resolve a long axis) and keeps the one that indexes the most frames; and the de-novo space-group search no longer discards all reflections (and crashes) when every resolution shell falls below <I/sigma> = 1. * rugnux: Lower the low-resolution R-meas for strongly-diffracting rotation data - drop edge-of-sweep truncated fulls whose rocking curve was captured below `--min-captured-fraction` (default 0.7 for rotation), and report R-meas only over the observations kept by outlier rejection (matching XDS). The 0.7 default also strips the partiality-extrapolated fulls that dominate the intensity second moment on weakly-diffracting crystals, so the de-novo space-group search is no longer starved by the error-model I/sigma floor and recovers the correct symmetry (e.g. the F-cubic Benas crystals: Benas_3 -> F432, Benas_7 -> P6122, instead of P4/P1); on the reference battery every other crystal keeps its space group. * rugnux: Write the refined geometry (beam, tilt, axis) to _process.h5 and place non-standard mmCIF items under a reserved `jfjoch` prefix. * jfjoch_broker: Ordinary acquisition failures (receiver/writer/analysis problems, missed packets, writer disconnect) now return to the Idle state with an Error-severity message, so a run can be retried without an expensive re-initialisation; only failures that leave the detector in an undefined state (new JFJochCriticalException, e.g. PCIe/FPGA faults) go to the Error state and force re-initialisation. * jfjoch_broker: A synchronous /start now reports its failure to the HTTP caller instead of returning HTTP 200, and an incomplete or truncated dataset (missing packets, writer disconnect) is reported as an error rather than a "reduce frame rate" warning. * jfjoch_broker: Drop uncollected placeholder rows (number = -1) from the scan_result REST endpoint. * jfjoch_broker: Fix the inverted per-image compression ratio reported by the Lite receiver (was compressed/uncompressed instead of uncompressed/compressed). * jfjoch_broker: Bragg integration adds a quantization-noise variance floor with a box-sum fallback, and treats the type-maximum marker as an invalid pixel for unsigned image types. * jfjoch_writer: Detect file-overwrite conflicts at start for back-channel transports, and reset the writer when end-of-collection finalisation fails. * jfjoch_viewer: Preview overlays follow the geometry (resolution/ROI arcs, true beam centre, predictions, coral secondary-lattice spots, legend), add save-as-JPEG, and fix an HTTP live-follow memory leak. * Frontend: Improved aesthetics and usability, and added in-browser pixel-mask and JUNGFRAU-pedestal visualisation. * CI: Name the Windows installer jfjoch-viewer-* instead of jfjoch-*.Reviewed-on: #67 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
122 lines
4.2 KiB
C++
122 lines
4.2 KiB
C++
// SPDX-FileCopyrightText: 2025 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
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// SPDX-License-Identifier: GPL-3.0-only
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#pragma once
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#include "JFJochImage.h"
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#include "../../reader/JFJochReaderImage.h"
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#include "../../common/ROIDefinition.h"
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class ROIAzimuthal;
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class DiffractionGeometry;
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class JFJochDiffractionImage : public JFJochImage {
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Q_OBJECT
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QColor spot_color = Qt::green;
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QColor prediction_color = Qt::darkRed;
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QColor ice_ring_color = Qt::cyan;
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QColor second_lattice_color = QColor(0xFA, 0x72, 0x68); // coral, the viewer "finishing" accent
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float hover_resolution = NAN;
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QGraphicsTextItem* hover_resolution_item = nullptr; // big text in top-left
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public:
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enum class RingMode {Auto, Estimation, Manual, None, IceRings};
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Q_ENUM(RingMode)
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JFJochDiffractionImage(QWidget *parent = nullptr);
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private:
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void addCustomOverlay() override;
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void LoadImageInternal();
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void DrawResolutionRings();
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void DrawROIs();
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void DrawAzimuthalROI(const ROIAzimuthal &az, const QColor &color, const DiffractionGeometry &geom);
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void AddROILabel(const std::string &name, const QColor &color, float px, float py);
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// Interactive editing of the selected (named) ROI: move box/circle for now.
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bool roiEditPress(const QPointF &scenePos) override;
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void roiEditMove(const QPointF &scenePos) override;
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void roiEditRelease() override;
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void roiScratchDrawn() override;
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void keyPressEvent(QKeyEvent *event) override; // Delete removes the selected ROI
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[[nodiscard]] ROIDefinition BuildEditedROIDefinition() const; // current ROIs with the edit applied
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[[nodiscard]] ResizeHandle hitTestBoxHandle(const QRectF &r, const QPointF &p, qreal tol) const;
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// Grab points for an azimuthal ROI: inner/outer arc (resize Q/d) and the two phi
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// edges (rotate). The phi handles are only meaningful for a sector (HasPhi()).
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void azimuthalHandles(const ROIAzimuthal &az, const DiffractionGeometry &geom,
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QPointF &inner, QPointF &outer, QPointF &phimin, QPointF &phimax) const;
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QString selected_roi_;
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enum class RoiEdit { None, MoveBox, ResizeBox, MoveCircle, ResizeCircle,
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AzimInner, AzimOuter, RotatePhiMin, RotatePhiMax };
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RoiEdit roi_edit_ = RoiEdit::None;
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ResizeHandle box_handle_ = ResizeHandle::None;
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QString edit_name_;
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QRectF edit_box_;
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QPointF edit_center_;
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double edit_radius_ = 0;
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float edit_d_min_ = 0, edit_d_max_ = 0, edit_phi_min_ = 0, edit_phi_max_ = 0; // azimuthal edit state
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bool edit_has_phi_ = false;
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QPointF move_last_;
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bool live_pending_ = false; // a live edit is being recomputed; throttles emissions
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void DrawSpots();
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void DrawPredictions();
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void DrawBeamCenter();
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void DrawTopPixels();
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void DrawSaturation();
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void DrawResolutionText();
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void DrawCross(float x, float y, float size, float width, float z = 1);
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void UpdateForeground();
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void beforeOverlayCleared() override;
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void leaveEvent(QEvent *event) override;
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std::shared_ptr<const JFJochReaderImage> image;
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int32_t show_highest_pixels = 0;
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QVector<float> res_ring = {};
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RingMode ring_mode = RingMode::Estimation;
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bool show_spots = false;
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bool show_predictions = false;
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bool show_roi_labels = false;
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bool show_roi_fill = false;
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bool highlight_ice_rings = true;
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float ice_ring_width_Q_recipA = 0.01;
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void mouseHover(QMouseEvent* event) override;
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signals:
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void roiGeometryEdited(ROIDefinition rois);
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void roiSelected(QString name); // user picked an ROI by clicking it on the image
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public slots:
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void setSelectedROI(QString name);
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void loadImage(std::shared_ptr<const JFJochReaderImage> image);
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void setAutoForeground(bool input);
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void setResolutionRing(QVector<float> v);
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void setResolutionRingMode(RingMode mode);
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void showSpots(bool input);
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void showPredictions(bool input);
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void showROILabels(bool input);
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void showROIFill(bool input);
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void setSpotColor(QColor input);
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void setPredictionColor(QColor input);
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void showHighestPixels(int32_t v);
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void showSaturation(bool input);
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void highlightIceRings(bool input);
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void setHDRMode(bool input);
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};
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