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leonarski_fandClaude Opus 5.5 b17b643bd9 Readers: polarization from miniCBF and d*TREK headers (RESULT-CHANGING) 
No reader parsed a polarization, and ApplyRugnuxExperimentDefaults then set
P = 0.99 (an undulator value) unconditionally, so laboratory-source data were
corrected as if from a synchrotron. Every d*TREK (Rigaku Saturn/A200) header in
the open arm states SOURCE_POLARZ=0.5 1 0 0, i.e. unpolarized; at Cu K-alpha and
2 A the wrong factor puts a +-33% azimuthal modulation on the intensities.

- d*TREK SMV: SOURCE_POLARZ is the fraction f followed by the plane normal (as
  dxtbx's FormatSMVRigaku reads it); stored as degree 2f - 1, negative where the
  normal lies along lab x (plane containing y).
- miniCBF: "# Polarization f" is the fraction in the horizontal plane; stored as
  2f - 1 ("None" or a missing line leave it unset).
- ApplyRugnuxExperimentDefaults sets 0.99 only where the file stated none;
  --polarization still overrides. ADSC SMV, marCCD and NXmx state nothing and
  keep 0.99.
- The "Header:" log line reports the stated polarization.

RESULT-CHANGING: d*TREK home-source sets (0.99 -> 0), one Rigaku miniCBF set
(0.99 -> 0), miniCBF sets stating 0.99 (0.99 -> 0.98).

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01PXc1zD1yxHqaR1DGdCTHL4
2026-10-18 09:25:14 +02:00
..
ADUHistogram.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ADUHistogram.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
AutoIncrVector.h
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
AzimuthalIntegrationMapping.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
AzimuthalIntegrationMapping.h
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
AzimuthalIntegrationProfile.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
AzimuthalIntegrationProfile.h
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
AzimuthalIntegrationSettings.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
AzimuthalIntegrationSettings.h
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
BraggIntegrationSettings.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
BraggIntegrationSettings.h
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
BrokerStatus.h
v1.0.0-rc.129 (#36)
2026-03-05 22:13:12 +01:00
CheckPath.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
CMakeLists.txt
Merge broker-rugnux-live into rc176: rugnux in jfjoch_broker as a live thread during a DECTRIS rotation collection (off by default), the rugnux library without file I/O (results in ProcessResult::outputs, the CLI writes them through JFJochRugnuxOutput), END carrying the merged table, map coefficients and placed model
2026-10-17 21:01:38 +02:00
ColorScale.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
ColorScale.h
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
CompressedImage.cpp
v1.0.0-rc.40
2025-05-28 18:49:27 +02:00
CompressedImage.h
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
Coord.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
Coord.h
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
CorrelationCoefficient.cpp
v1.0.0-rc.172 (#82)
2026-09-22 06:48:37 +02:00
CorrelationCoefficient.h
v1.0.0-rc.172 (#82)
2026-09-22 06:48:37 +02:00
CrystalLattice.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
CrystalLattice.h
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
CUDAWrapper.cpp
Speculative geometry probe beside the merge decided on bytes, not on a 12 GB card size
2026-10-17 12:41:45 +02:00
CUDAWrapper.cu
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
CUDAWrapper.h
Speculative geometry probe beside the merge decided on bytes, not on a 12 GB card size
2026-10-17 12:41:45 +02:00
DarkMaskSettings.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
DarkMaskSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DatasetSettings.cpp
v1.0.0-rc.167 (#77)
2026-09-09 07:25:13 +02:00
DatasetSettings.h
v1.0.0-rc.172 (#82)
2026-09-22 06:48:37 +02:00
Definitions.h
v1.0.0-rc.167 (#77)
2026-09-09 07:25:13 +02:00
DetectorGeometry.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorGeometryFixed.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
DetectorGeometryFixed.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorGeometryModular.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
DetectorGeometryModular.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorModuleGeometry.cpp
v1.0.0-rc.103 (#8)
2025-11-19 09:40:50 +01:00
DetectorModuleGeometry.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorOrientation.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
DetectorOrientation.h
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
DetectorSettings.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
DetectorSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorSetup.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
DetectorSetup.h
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
DetectorTransformation.cpp
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
DetectorTransformation.h
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
DiffractionExperiment.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
DiffractionExperiment.h
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
DiffractionGeometry.cpp
Readers: polarization from miniCBF and d*TREK headers (RESULT-CHANGING)
2026-10-18 09:25:14 +02:00
DiffractionGeometry.h
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
DiffractionSpot.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
DiffractionSpot.h
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
FFTWPlannerLock.h
v1.0.0-rc.172 (#82)
2026-09-22 06:48:37 +02:00
FileWriterSettings.cpp
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
FileWriterSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
GitInfo.cpp.in
v1.0.0-rc.169 (#79)
2026-09-15 17:09:31 +02:00
GitInfo.h
v1.0.0-rc.169 (#79)
2026-09-15 17:09:31 +02:00
GitInfoStamp.cmake
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
GoniometerAxis.cpp
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
GoniometerAxis.h
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
GridScanSettings.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
GridScanSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
Histogram.h
v1.0.0-rc.172 (#82)
2026-09-22 06:48:37 +02:00
hkl_key.h
v1.0.0-rc.124 (#31)
2026-02-01 13:29:33 +01:00
HostMemory.cpp
Host memory: the machine's total, a budget decided from it, and a pool for large per-worker buffers
2026-10-17 09:31:04 +02:00
HostMemory.h
HostWorkerPool: half the budget, MR placements reserve 16 B per grid point, output unchanged
2026-10-18 08:42:02 +02:00
ImageBuffer.cpp
broker rugnux live: rugnux plans its host memory against what the image buffer leaves
2026-10-17 21:03:07 +02:00
ImageBuffer.h
broker rugnux live: rugnux plans its host memory against what the image buffer leaves
2026-10-17 21:03:07 +02:00
ImageFormatSettings.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
ImageFormatSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
IndexingSettings.cpp
v1.0.0-rc.172 (#82)
2026-09-22 06:48:37 +02:00
IndexingSettings.h
v1.0.0-rc.172 (#82)
2026-09-22 06:48:37 +02:00
InstrumentMetadata.cpp
version 1.0.0-rc.27
2024-12-02 21:17:14 +01:00
InstrumentMetadata.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
JFJochException.h
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
JFJochMath.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
JFJochMessages.h
rugnux: the library returns its outputs in memory; the callers write the files
2026-10-17 16:51:20 +02:00
JFJochReceiverPlots.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
JFJochReceiverPlots.h
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
JfjochTCP.h
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
Logger.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
Logger.h
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
ModuleSummation.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
ModuleSummation.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
MovingAverage.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
MovingAverage.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
MtzTable.h
rugnux: the library returns its outputs in memory; the callers write the files
2026-10-17 16:51:20 +02:00
MultiLinePlot.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
MultiLinePlot.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
NetworkAddressConvert.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
NetworkAddressConvert.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ParallelFor.h
broker rugnux live: the ParallelFor pool is made at the broker's priority
2026-10-17 20:38:54 +02:00
PixelMask.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
PixelMask.h
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
Plot.h
v1.0.0-rc.167 (#77)
2026-09-09 07:25:13 +02:00
print_license.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
RawToConvertedGeometry.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
RawToConvertedGeometryCore.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
Reflection.h
1.0.0-rc.174 (#84)
2026-10-06 14:03:18 +02:00
ResolutionShells.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
ResolutionShells.h
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
ROIAzimuthal.cpp
v1.0.0-rc.170 (#80)
2026-09-16 18:17:46 +02:00
ROIAzimuthal.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIBox.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIBox.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROICircle.cpp
v1.0.0-rc.170 (#80)
2026-09-16 18:17:46 +02:00
ROICircle.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIDefinition.cpp
version 1.0.0-rc.29
2024-12-08 13:26:13 +01:00
ROIDefinition.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ROIElement.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIElement.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIMap.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIMap.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ScalingSettings.cpp
v1.0.0-rc.172 (#82)
2026-09-22 06:48:37 +02:00
ScalingSettings.h
v1.0.0-rc.172 (#82)
2026-09-22 06:48:37 +02:00
ScanResult.cpp
v1.0.0-rc.44
2025-06-15 17:46:46 +02:00
ScanResult.h
v1.0.0-rc.167 (#77)
2026-09-09 07:25:13 +02:00
ScanResultGenerator.cpp
v1.0.0-rc.167 (#77)
2026-09-09 07:25:13 +02:00
ScanResultGenerator.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
SpotToSave.cpp
v1.0.0-rc.72
2025-09-08 20:28:59 +02:00
SpotToSave.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
StatusVector.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
StatusVector.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
TableChecksum.h
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
ThreadAffinity.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
ThreadAffinity.h
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
ThreadSafeFIFO.h
v1.0.0-rc.172 (#82)
2026-09-22 06:48:37 +02:00
time_utc.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
TopPixels.cpp
v1.0.0-rc.121 (#28)
2025-12-12 21:24:20 +01:00
TopPixels.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
UnitCell.cpp
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
UnitCell.h
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
XrayFluorescenceSpectrum.cpp
v1.0.0-rc.81
2025-09-21 19:27:51 +02:00
XrayFluorescenceSpectrum.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ZeroCopyReturnValue.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
ZeroCopyReturnValue.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ZMQWrappers.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
ZMQWrappers.h
v1.0.0-rc.172 (#82)
2026-09-22 06:48:37 +02:00