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4 lines
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HTML
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class=md-nav__link ><strong>config_azim_int_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-azim-int-put" class=md-nav__link ><strong>config_azim_int_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-bragg-integration-get" class=md-nav__link ><strong>config_bragg_integration_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-bragg-integration-put" class=md-nav__link ><strong>config_bragg_integration_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-dark-mask-get" class=md-nav__link ><strong>config_dark_mask_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-dark-mask-put" class=md-nav__link ><strong>config_dark_mask_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-detector-get" class=md-nav__link ><strong>config_detector_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-detector-put" class=md-nav__link ><strong>config_detector_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-file-writer-get" class=md-nav__link ><strong>config_file_writer_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-file-writer-put" class=md-nav__link ><strong>config_file_writer_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-image-format-conversion-post" class=md-nav__link ><strong>config_image_format_conversion_post</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-image-format-get" class=md-nav__link ><strong>config_image_format_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-image-format-put" class=md-nav__link ><strong>config_image_format_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-image-format-raw-post" class=md-nav__link ><strong>config_image_format_raw_post</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-indexing-get" class=md-nav__link ><strong>config_indexing_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-indexing-put" class=md-nav__link ><strong>config_indexing_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-instrument-get" class=md-nav__link ><strong>config_instrument_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-instrument-put" class=md-nav__link ><strong>config_instrument_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-internal-generator-image-put" class=md-nav__link ><strong>config_internal_generator_image_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-internal-generator-image-tiff-put" class=md-nav__link ><strong>config_internal_generator_image_tiff_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-mask-get" class=md-nav__link ><strong>config_mask_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-mask-tiff-get" class=md-nav__link ><strong>config_mask_tiff_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-roi-get" class=md-nav__link ><strong>config_roi_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-roi-put" class=md-nav__link ><strong>config_roi_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-select-detector-get" class=md-nav__link ><strong>config_select_detector_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-select-detector-put" class=md-nav__link ><strong>config_select_detector_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-spot-finding-get" class=md-nav__link ><strong>config_spot_finding_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-spot-finding-put" class=md-nav__link ><strong>config_spot_finding_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-user-mask-get" class=md-nav__link ><strong>config_user_mask_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-user-mask-put" class=md-nav__link ><strong>config_user_mask_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-user-mask-tiff-get" class=md-nav__link ><strong>config_user_mask_tiff_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-user-mask-tiff-put" class=md-nav__link ><strong>config_user_mask_tiff_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-zeromq-metadata-get" class=md-nav__link ><strong>config_zeromq_metadata_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-zeromq-metadata-put" class=md-nav__link ><strong>config_zeromq_metadata_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-zeromq-preview-get" class=md-nav__link ><strong>config_zeromq_preview_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-zeromq-preview-put" class=md-nav__link ><strong>config_zeromq_preview_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#deactivate-post" class=md-nav__link ><strong>deactivate_post</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#detector-status-get" class=md-nav__link ><strong>detector_status_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#fpga-status-get" class=md-nav__link ><strong>fpga_status_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#image-buffer-clear-post" class=md-nav__link ><strong>image_buffer_clear_post</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#image-buffer-image-cbor-get" class=md-nav__link ><strong>image_buffer_image_cbor_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#image-buffer-image-jpeg-get" class=md-nav__link ><strong>image_buffer_image_jpeg_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#image-buffer-image-tiff-get" class=md-nav__link ><strong>image_buffer_image_tiff_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#image-buffer-start-cbor-get" class=md-nav__link ><strong>image_buffer_start_cbor_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#image-buffer-status-get" class=md-nav__link ><strong>image_buffer_status_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#image-pusher-status-get" class=md-nav__link ><strong>image_pusher_status_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#initialize-post" class=md-nav__link ><strong>initialize_post</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#pedestal-post" class=md-nav__link ><strong>pedestal_post</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#preview-pedestal-tiff-get" class=md-nav__link ><strong>preview_pedestal_tiff_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#preview-plot-bin-get" class=md-nav__link ><strong>preview_plot_bin_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#preview-plot-get" class=md-nav__link ><strong>preview_plot_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#result-scan-get" class=md-nav__link ><strong>result_scan_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#start-post" class=md-nav__link ><strong>start_post</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#statistics-calibration-get" class=md-nav__link ><strong>statistics_calibration_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#statistics-data-collection-get" class=md-nav__link ><strong>statistics_data_collection_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#statistics-get" class=md-nav__link ><strong>statistics_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#status-get" class=md-nav__link ><strong>status_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#trigger-post" class=md-nav__link ><strong>trigger_post</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#version-get" class=md-nav__link ><strong>version_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#wait-till-done-post" class=md-nav__link ><strong>wait_till_done_post</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#wait-until-running-post" class=md-nav__link ><strong>wait_until_running_post</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#xfel-event-code-get" class=md-nav__link ><strong>xfel_event_code_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#xfel-pulse-id-get" class=md-nav__link ><strong>xfel_pulse_id_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/AzimIntSettings.html" class=md-nav__link >AzimIntSettings</a> <li class=md-nav__item > <a href="python_client/docs/BraggIntegrationSettings.html" class=md-nav__link >BraggIntegrationSettings</a> <li class=md-nav__item > <a href="python_client/docs/BrokerStatus.html" class=md-nav__link >BrokerStatus</a> <li class=md-nav__item > <a href="python_client/docs/CalibrationStatisticsInner.html" class=md-nav__link >CalibrationStatisticsInner</a> <li class=md-nav__item > <a href="python_client/docs/DarkMaskSettings.html" class=md-nav__link >DarkMaskSettings</a> <li class=md-nav__item > <a href="python_client/docs/DatasetSettings.html" class=md-nav__link >DatasetSettings</a> <li class=md-nav__item > <a href="python_client/docs/DatasetSettingsSmargon.html" class=md-nav__link >DatasetSettingsSmargon</a> <li class=md-nav__item > <a href="python_client/docs/DatasetSettingsXrayFluorescenceSpectrum.html" class=md-nav__link >DatasetSettingsXrayFluorescenceSpectrum</a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html" class=md-nav__link >jfjoch_client.DefaultApi</a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#cancel-post" class=md-nav__link ><strong>cancel_post</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-azim-int-get" class=md-nav__link ><strong>config_azim_int_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-azim-int-put" class=md-nav__link ><strong>config_azim_int_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-bragg-integration-get" class=md-nav__link ><strong>config_bragg_integration_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-bragg-integration-put" class=md-nav__link ><strong>config_bragg_integration_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-dark-mask-get" class=md-nav__link ><strong>config_dark_mask_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-dark-mask-put" class=md-nav__link ><strong>config_dark_mask_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-detector-get" class=md-nav__link ><strong>config_detector_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-detector-put" class=md-nav__link ><strong>config_detector_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-file-writer-get" class=md-nav__link ><strong>config_file_writer_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-file-writer-put" class=md-nav__link ><strong>config_file_writer_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-image-format-conversion-post" class=md-nav__link ><strong>config_image_format_conversion_post</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-image-format-get" class=md-nav__link ><strong>config_image_format_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-image-format-put" class=md-nav__link ><strong>config_image_format_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-image-format-raw-post" class=md-nav__link ><strong>config_image_format_raw_post</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-indexing-get" class=md-nav__link ><strong>config_indexing_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-indexing-put" class=md-nav__link ><strong>config_indexing_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-instrument-get" class=md-nav__link ><strong>config_instrument_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-instrument-put" class=md-nav__link ><strong>config_instrument_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-internal-generator-image-put" class=md-nav__link ><strong>config_internal_generator_image_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-internal-generator-image-tiff-put" class=md-nav__link ><strong>config_internal_generator_image_tiff_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-mask-get" class=md-nav__link ><strong>config_mask_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-mask-tiff-get" class=md-nav__link ><strong>config_mask_tiff_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-roi-get" class=md-nav__link ><strong>config_roi_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-roi-put" class=md-nav__link ><strong>config_roi_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-select-detector-get" class=md-nav__link ><strong>config_select_detector_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-select-detector-put" class=md-nav__link ><strong>config_select_detector_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-spot-finding-get" class=md-nav__link ><strong>config_spot_finding_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-spot-finding-put" class=md-nav__link ><strong>config_spot_finding_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-user-mask-get" class=md-nav__link ><strong>config_user_mask_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-user-mask-put" class=md-nav__link ><strong>config_user_mask_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-user-mask-tiff-get" class=md-nav__link ><strong>config_user_mask_tiff_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-user-mask-tiff-put" class=md-nav__link ><strong>config_user_mask_tiff_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-zeromq-metadata-get" class=md-nav__link ><strong>config_zeromq_metadata_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-zeromq-metadata-put" class=md-nav__link ><strong>config_zeromq_metadata_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-zeromq-preview-get" class=md-nav__link ><strong>config_zeromq_preview_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#config-zeromq-preview-put" class=md-nav__link ><strong>config_zeromq_preview_put</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#deactivate-post" class=md-nav__link ><strong>deactivate_post</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#detector-status-get" class=md-nav__link ><strong>detector_status_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#fpga-status-get" class=md-nav__link ><strong>fpga_status_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#image-buffer-clear-post" class=md-nav__link ><strong>image_buffer_clear_post</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#image-buffer-image-cbor-get" class=md-nav__link ><strong>image_buffer_image_cbor_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#image-buffer-image-jpeg-get" class=md-nav__link ><strong>image_buffer_image_jpeg_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#image-buffer-image-tiff-get" class=md-nav__link ><strong>image_buffer_image_tiff_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#image-buffer-start-cbor-get" class=md-nav__link ><strong>image_buffer_start_cbor_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#image-buffer-status-get" class=md-nav__link ><strong>image_buffer_status_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#image-pusher-status-get" class=md-nav__link ><strong>image_pusher_status_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#initialize-post" class=md-nav__link ><strong>initialize_post</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#pedestal-post" class=md-nav__link ><strong>pedestal_post</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#preview-pedestal-tiff-get" class=md-nav__link ><strong>preview_pedestal_tiff_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#preview-plot-bin-get" class=md-nav__link ><strong>preview_plot_bin_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#preview-plot-get" class=md-nav__link ><strong>preview_plot_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#result-scan-get" class=md-nav__link ><strong>result_scan_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#start-post" class=md-nav__link ><strong>start_post</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#statistics-calibration-get" class=md-nav__link ><strong>statistics_calibration_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#statistics-data-collection-get" class=md-nav__link ><strong>statistics_data_collection_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#statistics-get" class=md-nav__link ><strong>statistics_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#status-get" class=md-nav__link ><strong>status_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#trigger-post" class=md-nav__link ><strong>trigger_post</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#version-get" class=md-nav__link ><strong>version_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#wait-till-done-post" class=md-nav__link ><strong>wait_till_done_post</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#wait-until-running-post" class=md-nav__link ><strong>wait_until_running_post</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#xfel-event-code-get" class=md-nav__link ><strong>xfel_event_code_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/DefaultApi.html#xfel-pulse-id-get" class=md-nav__link ><strong>xfel_pulse_id_get</strong></a> <li class=md-nav__item > <a href="python_client/docs/Detector.html" class=md-nav__link >Detector</a> <li class=md-nav__item > <a href="python_client/docs/DetectorList.html" class=md-nav__link >DetectorList</a> <li class=md-nav__item > <a href="python_client/docs/DetectorListElement.html" class=md-nav__link >DetectorListElement</a> <li class=md-nav__item > <a href="python_client/docs/DetectorModule.html" class=md-nav__link >DetectorModule</a> <li class=md-nav__item > <a href="python_client/docs/DetectorModuleDirection.html" class=md-nav__link >DetectorModuleDirection</a> <li class=md-nav__item > <a href="python_client/docs/DetectorPowerState.html" class=md-nav__link >DetectorPowerState</a> <li class=md-nav__item > <a href="python_client/docs/DetectorSelection.html" class=md-nav__link >DetectorSelection</a> <li class=md-nav__item > <a href="python_client/docs/DetectorSettings.html" class=md-nav__link >DetectorSettings</a> <li class=md-nav__item > <a href="python_client/docs/DetectorState.html" class=md-nav__link >DetectorState</a> <li class=md-nav__item > <a href="python_client/docs/DetectorStatus.html" class=md-nav__link >DetectorStatus</a> <li class=md-nav__item > <a href="python_client/docs/DetectorTiming.html" class=md-nav__link >DetectorTiming</a> <li class=md-nav__item > <a href="python_client/docs/DetectorType.html" class=md-nav__link >DetectorType</a> <li class=md-nav__item > <a href="python_client/docs/ErrorMessage.html" class=md-nav__link >ErrorMessage</a> <li class=md-nav__item > <a href="python_client/docs/FileWriterFormat.html" class=md-nav__link >FileWriterFormat</a> <li class=md-nav__item > <a href="python_client/docs/FileWriterSettings.html" class=md-nav__link >FileWriterSettings</a> <li class=md-nav__item > <a href="python_client/docs/FpgaStatusInner.html" class=md-nav__link >FpgaStatusInner</a> <li class=md-nav__item > <a href="python_client/docs/GeomRefinementAlgorithm.html" class=md-nav__link >GeomRefinementAlgorithm</a> <li class=md-nav__item > <a href="python_client/docs/GridScan.html" class=md-nav__link >GridScan</a> <li class=md-nav__item > <a href="python_client/docs/ImageBufferStatus.html" class=md-nav__link >ImageBufferStatus</a> <li class=md-nav__item > <a href="python_client/docs/ImageFormatSettings.html" class=md-nav__link >ImageFormatSettings</a> <li class=md-nav__item > <a href="python_client/docs/ImagePusherStatus.html" class=md-nav__link >ImagePusherStatus</a> <li class=md-nav__item > <a href="python_client/docs/ImagePusherType.html" class=md-nav__link >ImagePusherType</a> <li class=md-nav__item > <a href="python_client/docs/IndexingAlgorithm.html" class=md-nav__link >IndexingAlgorithm</a> <li class=md-nav__item > <a href="python_client/docs/IndexingSettings.html" class=md-nav__link >IndexingSettings</a> <li class=md-nav__item > <a href="python_client/docs/InstrumentMetadata.html" class=md-nav__link >InstrumentMetadata</a> <li class=md-nav__item > <a href="python_client/docs/IntegrationModel.html" class=md-nav__link >IntegrationModel</a> <li class=md-nav__item > <a href="python_client/docs/JfjochSettings.html" class=md-nav__link >JfjochSettings</a> <li class=md-nav__item > <a href="python_client/docs/JfjochStatistics.html" class=md-nav__link >JfjochStatistics</a> <li class=md-nav__item > <a href="python_client/docs/MeasurementStatistics.html" class=md-nav__link >MeasurementStatistics</a> <li class=md-nav__item > <a href="python_client/docs/PcieDevicesInner.html" class=md-nav__link >PcieDevicesInner</a> <li class=md-nav__item > <a href="python_client/docs/PixelMaskStatistics.html" class=md-nav__link >PixelMaskStatistics</a> <li class=md-nav__item > <a href="python_client/docs/Plot.html" class=md-nav__link >Plot</a> <li class=md-nav__item > <a href="python_client/docs/PlotUnitX.html" class=md-nav__link >PlotUnitX</a> <li class=md-nav__item > <a href="python_client/docs/Plots.html" class=md-nav__link >Plots</a> <li class=md-nav__item > <a href="python_client/docs/RoiAzimList.html" class=md-nav__link >RoiAzimList</a> <li class=md-nav__item > <a href="python_client/docs/RoiAzimuthal.html" class=md-nav__link >RoiAzimuthal</a> <li class=md-nav__item > <a href="python_client/docs/RoiBox.html" class=md-nav__link >RoiBox</a> <li class=md-nav__item > <a href="python_client/docs/RoiBoxList.html" class=md-nav__link >RoiBoxList</a> <li class=md-nav__item > <a href="python_client/docs/RoiCircle.html" class=md-nav__link >RoiCircle</a> <li class=md-nav__item > <a href="python_client/docs/RoiCircleList.html" class=md-nav__link >RoiCircleList</a> <li class=md-nav__item > <a href="python_client/docs/RoiDefinitions.html" class=md-nav__link >RoiDefinitions</a> <li class=md-nav__item > <a href="python_client/docs/RotationAxis.html" class=md-nav__link >RotationAxis</a> <li class=md-nav__item > <a href="python_client/docs/ScanResult.html" class=md-nav__link >ScanResult</a> <li class=md-nav__item > <a href="python_client/docs/ScanResultImagesInner.html" class=md-nav__link >ScanResultImagesInner</a> <li class=md-nav__item > <a href="python_client/docs/SpotFindingSettings.html" class=md-nav__link >SpotFindingSettings</a> <li class=md-nav__item > <a href="python_client/docs/StandardDetectorGeometry.html" class=md-nav__link >StandardDetectorGeometry</a> <li class=md-nav__item > <a href="python_client/docs/TcpSettings.html" class=md-nav__link >TcpSettings</a> <li class=md-nav__item > <a href="python_client/docs/UnitCell.html" class=md-nav__link >UnitCell</a> <li class=md-nav__item > <a href="python_client/docs/ZeromqMetadataSettings.html" class=md-nav__link >ZeromqMetadataSettings</a> <li class=md-nav__item > <a href="python_client/docs/ZeromqPreviewSettings.html" class=md-nav__link >ZeromqPreviewSettings</a> <li class=md-nav__item > <a href="python_client/docs/ZeromqSettings.html" class=md-nav__link >ZeromqSettings</a> </ul> </nav> </div> </div> </div> <div class="md-sidebar md-sidebar--secondary" data-md-component=toc > <div class=md-sidebar__scrollwrap > <div class=md-sidebar__inner > <nav class="md-nav md-nav--secondary"> <ul class=md-nav__list data-md-scrollfix=""> </ul> </nav> </div> </div> </div> <div class=md-content > <article class="md-content__inner md-typeset" role=main > <section class="tex2jax_ignore mathjax_ignore" id=integration-with-mx-data-processing-software > <h1 id=software-integration--page-root >Integration with MX data processing software<a class=headerlink href="#software-integration--page-root" title="Link to this heading">¶</a></h1> <p>Jungfraujoch writes NXmx HDF5 in three layouts (see <a class="reference internal" href=HDF5.html ><span class="std std-doc">HDF5 / NeXus data format</span></a>), and not every downstream program reads all three. <strong><code class="docutils literal notranslate"><span class=pre >NXmxVDS</span></code> is the default and the one to use unless a program specifically needs another.</strong></p> <table> <thead> <tr class=row-odd ><th class=head ><p></p> <th class=head ><p><code class="docutils literal notranslate"><span class=pre >NXmxLegacy</span></code></p> <th class=head ><p><code class="docutils literal notranslate"><span class=pre >NXmxVDS</span></code> (default)</p> <th class=head ><p><code class="docutils literal notranslate"><span class=pre >NXmxIntegrated</span></code></p> <tr class=row-even ><td><p>Jungfraujoch XDS plugin</p> <td><p>yes</p> <td><p>yes</p> <td><p>yes</p> <tr class=row-odd ><td><p>Durin (Global Phasing)</p> <td><p>yes</p> <td><p>yes</p> <td><p>yes</p> <tr class=row-even ><td><p>Durin (Diamond, original)</p> <td><p>yes</p> <td><p>known bugs</p> <td><p>known bugs</p> <tr class=row-odd ><td><p>Neggia</p> <td><p>yes</p> <td><p><strong>no</strong> — no virtual-dataset support</p> <td><p>not tested</p> <tr class=row-even ><td><p>DIALS / xia2</p> <td><p><strong>only one data file</strong></p> <td><p>yes</p> <td><p>yes</p> <tr class=row-odd ><td><p>CrystFEL</p> <td><p>yes</p> <td><p>yes</p> <td><p>yes</p> </table> <p><code class="docutils literal notranslate"><span class=pre >NXmxLegacy</span></code> joins the data files to the master with external links, which is what DECTRIS’s filewriter-1 format did. Use it only for a program that needs it, and then keep the whole run in a single data file — see the DIALS section below.</p> <section id=xds > <h2 id=xds >XDS<a class=headerlink href="#xds" title="Link to this heading">¶</a></h2> <p>XDS reads HDF5 through a plugin, named in <code class="docutils literal notranslate"><span class=pre >XDS.INP</span></code>:</p> <div class="highlight-default notranslate"><div class=highlight ><pre><span></span><span class=n >LIB</span><span class=o >=</span><span class=s2 >"/opt/xds/libjfjoch_xds_plugin.so.1.0.0"</span>
|
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</pre></div> </div> <p><strong>Use the Jungfraujoch plugin.</strong> It is Linux-only, is downloadable from the Gitea release directory (built on RHEL 8), and also ships inside the <a class="reference internal" href=JFJOCH_VIEWER.html ><span class="std std-doc"><code class="docutils literal notranslate"><span class=pre >jfjoch_viewer</span></code></span></a> RPM/APT packages. The three numbers are the plugin version and change over time.</p> <p>The alternatives, in order of preference:</p> <ul class=simple > <li><p><strong>Durin, Global Phasing build</strong> — <a class="reference external" href="https://github.com/CV-GPhL/durin">github.com/CV-GPhL/durin</a>. Prefer it over the original from Diamond Light Source, which has known bugs with non-DECTRIS files (virtual datasets and the single-file layout). It is the only third-party plugin that reads <strong>signed</strong> Jungfraujoch images correctly.</p> <li><p><strong>Neggia</strong> — <a class="reference external" href="https://github.com/dectris/neggia/">github.com/dectris/neggia</a>. No virtual-dataset support, so it cannot read the default layout. <strong>It also mis-reads signed 16-bit images</strong>: it dispatches on the pixel size in bytes and always casts to an unsigned type, so a count of <code class="docutils literal notranslate"><span class=pre >-2</span></code> reaches XDS as <code class="docutils literal notranslate"><span class=pre >65534</span></code> and the <code class="docutils literal notranslate"><span class=pre >-32768</span></code> error marker as <code class="docutils literal notranslate"><span class=pre >32768</span></code>. Signed 32-bit degrades safely. Since JUNGFRAU in photon-counting conversion writes signed images by default, this affects the ordinary PSI case — do not use Neggia for it.</p> </ul> <section id=overload-must-be-set-by-hand > <h3 id=overload-must-be-set-by-hand ><code class="docutils literal notranslate"><span class=pre >OVERLOAD</span></code> must be set by hand<a class=headerlink href="#overload-must-be-set-by-hand" title="Link to this heading">¶</a></h3> <p>No XDS plugin — ours, Durin or Neggia — reads <code class="docutils literal notranslate"><span class=pre >saturation_value</span></code> from the file. XDS therefore takes its overload from <code class="docutils literal notranslate"><span class=pre >OVERLOAD=</span></code> in <code class="docutils literal notranslate"><span class=pre >XDS.INP</span></code>, and you must set it to the master file’s <code class="docutils literal notranslate"><span class=pre >/entry/instrument/detector/saturation_value</span></code>. XDS treats it inclusively: a pixel is overloaded when it <em>exceeds</em> <code class="docutils literal notranslate"><span class=pre >OVERLOAD</span></code>.</p> </section> <section id=signed-images > <h3 id=signed-images >Signed images<a class=headerlink href="#signed-images" title="Link to this heading">¶</a></h3> <p><code class="docutils literal notranslate"><span class=pre >MINIMUM_VALID_PIXEL_VALUE=</span></code> may not be negative in current XDS, so a genuinely negative photon count — the reason signed output exists — cannot be declared valid. xia2 clamps the value to 0. There is no header field that changes this: if XDS is the target, consider collecting unsigned.</p> </section> <section id=which-pixels-are-masked > <h3 id=which-pixels-are-masked >Which pixels are masked<a class=headerlink href="#which-pixels-are-masked" title="Link to this heading">¶</a></h3> <p>The plugins do not all act on the same mask bits, so XDS and DIALS do not mask the same pixels:</p> <table> <thead> <tr class=row-odd ><th class=head ><p>mask bit</p> <th class=head ><p>meaning</p> <th class=head ><p>jfjoch plugin</p> <th class=head ><p>Durin / Neggia</p> <th class=head ><p>DIALS</p> <tr class=row-even ><td><p>0</p> <td><p>module gap</p> <td><p>yes</p> <td><p>yes</p> <td><p>yes</p> <tr class=row-odd ><td><p>1, 4, 8, 9</p> <td><p>error, noisy, user mask, beam stop</p> <td><p>yes</p> <td><p><strong>no</strong></p> <td><p>yes</p> <tr class=row-even ><td><p>30</p> <td><p>module edge</p> <td><p>yes</p> <td><p><strong>no</strong></p> <td><p>yes</p> <tr class=row-odd ><td><p>31</p> <td><p>chip gap</p> <td><p><strong>no</strong></p> <td><p><strong>no</strong></p> <td><p>yes</p> </table> <p>DIALS masks a pixel whenever <em>any</em> <code class="docutils literal notranslate"><span class=pre >pixel_mask</span></code> bit is set; Durin and Neggia look only at the low byte and at bits 1–4. On a JUNGFRAU with the default edge masking this is a difference of order 2% of the detector. Bits 30 and 31 mark pixels that are larger than normal rather than bad, which is why the Jungfraujoch plugin passes chip-gap pixels through — but be aware that a dataset processed by XDS and by DIALS will not have used exactly the same pixels.</p> </section> </section> <section id=dials > <h2 id=dials >DIALS<a class=headerlink href="#dials" title="Link to this heading">¶</a></h2> <p>Tested regularly against DIALS (currently 3.27.0), including the <code class="docutils literal notranslate"><span class=pre >xia2.ssx</span></code> pipeline for serial crystallography.</p> <ul class=simple > <li><p>Use <code class="docutils literal notranslate"><span class=pre >NXmxVDS</span></code> or <code class="docutils literal notranslate"><span class=pre >NXmxIntegrated</span></code>. With <code class="docutils literal notranslate"><span class=pre >NXmxLegacy</span></code>, DIALS reads only the <strong>first</strong> data file and reports a correspondingly short image count, without an error; if a goniometer is present it then fails on the frames past the first file. A legacy run that fits in one data file is read correctly — set <code class="docutils literal notranslate"><span class=pre >images_per_file</span></code> to cover the whole run.</p> <li><p>Unsigned 32-bit images require <code class="docutils literal notranslate"><span class=pre >bit_depth_readout</span></code>, which Jungfraujoch writes. For signed images the field is deliberately omitted: DIALS remaps the top two codes of <code class="docutils literal notranslate"><span class=pre >2^bit_depth_readout</span></code>, and on signed data those land inside the trusted range.</p> <li><p><code class="docutils literal notranslate"><span class=pre >trusted_range</span></code> is inclusive at both ends, and is taken from <code class="docutils literal notranslate"><span class=pre >underload_value</span></code> and <code class="docutils literal notranslate"><span class=pre >saturation_value</span></code>.</p> </ul> </section> <section id=pyfai > <h2 id=pyfai >pyFAI<a class=headerlink href="#pyfai" title="Link to this heading">¶</a></h2> <p><code class="docutils literal notranslate"><span class=pre >rugnux</span> <span class=pre >--mode</span> <span class=pre >calibration</span></code> writes a <code class="docutils literal notranslate"><span class=pre >.poni</span></code> file describing the detector geometry — see <a class="reference internal" href=DETECTOR_GEOMETRY.html ><span class="std std-doc">Detector geometry</span></a> and <a class="reference internal" href=RUGNUX.html ><span class="std std-doc">rugnux</span></a>.</p> <ul> <li><p>It declares <code class="docutils literal notranslate"><span class=pre >orientation</span></code>, so it needs <strong>pyFAI 2024.01 or newer</strong>. An older pyFAI ignores the key and places the beam centre wrongly along the slow axis.</p> <li><p>A <code class="docutils literal notranslate"><span class=pre >.poni</span></code> file carries geometry only. pyFAI does <strong>not</strong> learn the saturation value, the error marker or the pixel mask from it, and will happily integrate a masked pixel at <code class="docutils literal notranslate"><span class=pre >UINTx_MAX</span></code> as a count. Pass the marker and the mask at integration time:</p> <div class="highlight-python notranslate"><div class=highlight ><pre><span></span><span class=n >ai</span> <span class=o >=</span> <span class=n >pyFAI</span><span class=o >.</span><span class=n >load</span><span class=p >(</span><span class=s2 >"calibration.poni"</span><span class=p >)</span>
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<span class=n >res</span> <span class=o >=</span> <span class=n >ai</span><span class=o >.</span><span class=n >integrate1d</span><span class=p >(</span><span class=n >image</span><span class=p >,</span> <span class=mi >1000</span><span class=p >,</span> <span class=n >dummy</span><span class=o >=</span><span class=mi >65535</span><span class=p >,</span> <span class=n >delta_dummy</span><span class=o >=</span><span class=mf >0.5</span><span class=p >,</span> <span class=n >mask</span><span class=o >=</span><span class=n >pixel_mask</span> <span class=o >!=</span> <span class=mi >0</span><span class=p >)</span>
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</pre></div> </div> <p>with <code class="docutils literal notranslate"><span class=pre >dummy</span></code> set to the master file’s <code class="docutils literal notranslate"><span class=pre >/entry/instrument/detector/error_value</span></code> for the stored pixel type, and <code class="docutils literal notranslate"><span class=pre >pixel_mask</span></code> read from <code class="docutils literal notranslate"><span class=pre >/entry/instrument/detector/pixel_mask</span></code>.</p> </ul> </section> <section id=crystfel > <h2 id=crystfel >CrystFEL<a class=headerlink href="#crystfel" title="Link to this heading">¶</a></h2> <p>Jungfraujoch files are compatible with CrystFEL. <code class="docutils literal notranslate"><span class=pre >max_adu</span></code> is inclusive — a pixel is bad when it exceeds the value — so set it from <code class="docutils literal notranslate"><span class=pre >saturation_value</span></code>.</p> </section> </section> </article> </div> </div> </main> </div> <footer class=md-footer > <div class=md-footer-nav > <nav class="md-footer-nav__inner md-grid"> <a href=JFJOCH_VIEWER.html title=jfjoch_viewer class="md-flex md-footer-nav__link md-footer-nav__link--prev" rel=prev > <div class="md-flex__cell md-flex__cell--shrink"> <i class="md-icon md-icon--arrow-back md-footer-nav__button"></i> </div> <div class="md-flex__cell md-flex__cell--stretch md-footer-nav__title"> <span class=md-flex__ellipsis > <span class=md-footer-nav__direction > "Previous" </span> jfjoch_viewer </span> </div> </a> <a href=TOOLS.html title=Tools class="md-flex md-footer-nav__link md-footer-nav__link--next" rel=next > <div class="md-flex__cell md-flex__cell--stretch md-footer-nav__title"><span class=md-flex__ellipsis > <span class=md-footer-nav__direction > "Next" </span> Tools </span> </div> <div class="md-flex__cell md-flex__cell--shrink"><i class="md-icon md-icon--arrow-forward md-footer-nav__button"></i> </div> </a> </nav> </div> <div class="md-footer-meta md-typeset"> <div class="md-footer-meta__inner md-grid"> <div class=md-footer-copyright > <div class=md-footer-copyright__highlight > © Copyright 2024, Paul Scherrer Institute. </div> Created using <a href="http://www.sphinx-doc.org/">Sphinx</a> 8.1.3. and <a href="https://github.com/bashtage/sphinx-material/">Material for Sphinx</a> </div> </div> </div> </footer> <script src="_static/javascripts/application.js"></script> <script>app.initialize({version: "1.0.4", url: {base: ".."}})</script> |