75 lines
2.3 KiB
C++
75 lines
2.3 KiB
C++
// Copyright (2019-2024) Paul Scherrer Institute
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#include "MXAnalyzer.h"
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#include "CPUSpotFinder.h"
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#include "../common/DiffractionGeometry.h"
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MXAnalyzer::MXAnalyzer(const DiffractionExperiment &in_experiment)
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: experiment(in_experiment) {
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auto uc = experiment.GetUnitCell();
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if (uc) {
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do_indexing = true;
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indexer.Setup(uc.value());
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}
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if (experiment.IsSpotFindingEnabled())
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find_spots = true;
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}
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void MXAnalyzer::ReadFromFPGA(const DeviceOutput *output, const SpotFindingSettings &settings, size_t module_number) {
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if (!find_spots || !settings.enable)
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return;
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StrongPixelSet strong_pixel_set;
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strong_pixel_set.ReadFPGAOutput(experiment, *output);
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strong_pixel_set.FindSpots(experiment, settings, spots, module_number);
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}
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void MXAnalyzer::ReadFromCPU(const int16_t *image, const SpotFindingSettings &settings, size_t module_number) {
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if (!find_spots)
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return;
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std::vector<float> d_map(RAW_MODULE_SIZE);
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DeviceOutput output{};
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memcpy(output.pixels, image, RAW_MODULE_SIZE * sizeof(int16_t));
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CalcSpotFinderResolutionMap(d_map.data(), experiment, module_number);
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FindSpots(output, settings, d_map.data());
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ReadFromFPGA(&output, settings, module_number);
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}
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bool MXAnalyzer::Process(DataMessage &message,
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const SpotFindingSettings& settings) {
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message.indexing_result = 0;
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if (!find_spots)
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return false;
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bool indexed = false;
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std::vector<DiffractionSpot> spots_out;
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FilterSpotsByCount(experiment, spots, spots_out);
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for (const auto &spot: spots_out)
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message.spots.push_back(spot);
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if (do_indexing && settings.indexing) {
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std::vector<Coord> recip;
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for (const auto &i: spots_out)
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recip.push_back(i.ReciprocalCoord(experiment));
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auto indexer_result = indexer.Run(recip);
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if (!indexer_result.empty()) {
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message.indexing_result = 1;
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for (int i = 0; i < recip.size(); i++)
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message.spots[i].indexed = indexer_result[0].indexed_spots[i];
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indexer_result[0].l.Save(message.indexing_lattice);
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message.indexing_unit_cell = indexer_result[0].l.GetUnitCell();
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indexed = true;
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}
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}
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spots.clear();
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return indexed;
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}
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