Files
Jungfraujoch/image_analysis
leonarski_fandClaude Opus 5.5 80ed784d1d rugnux: no .ccp4 map files - the maps are given as coefficients in _maps.mtz only
A model validation no longer writes <prefix>_2fofc.ccp4, _fofc.ccp4 and _anom.ccp4 (nor their _mr
twins); <prefix>_maps.mtz, which Coot and PyMOL open as maps, is what is written. With the files
goes everything that only existed for them: ModelMaps keeps the coefficients alone, the
keep_map_grids switch is gone from the validation schedule and the rugnux config, and the
mFo-DFc map is no longer transformed to real space at all (nothing read it). The 2mFo-DFc and
anomalous maps are still made, for the mean atom density and the anomalous-site read-out.

The anomalous difference map is now in no output file: _maps.mtz carries no anomalous columns.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01PXc1zD1yxHqaR1DGdCTHL4
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