Two offline-processing ergonomics changes.
scale-fulls is now ON by default for -P rot3d (it refits the per-frame scale on
the combined fulls and lifts ISa substantially, e.g. HEWL rot3d 7.0 -> 16.4).
--scale-fulls stays as the explicit opt-in for non-rot3d order; new
--no-scale-fulls disables it for rot3d. (scale_fulls is now an optional<bool>
defaulting to combine_3d.) Note: on low-completeness data the Unity-reference
refit can cost a little CC1/2 (endothiapepsin ~70% complete: -5% in a mid shell);
pair with --reject-outliers for the full low-symmetry benefit.
When merging (-M), the merged reflections (.mtz/.cif) are the wanted output, so
the large per-image _process.h5 is no longer written by default - it routinely
ran to hundreds of MB. Pass --write-process-h5 to also emit it. Without merging
the _process.h5 is the only output and is always written. Implemented with a
ProcessConfig.write_process_h5 flag gating the FileWriter; reflection and
image.dat writing are unaffected.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
leonarski_fandClaude Opus 4.8
77f1ed2566