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leonarski_fandClaude Fable 5 6ffb16f142 merge: mask ice rings whose CC1/2 collapses below their resolution neighbours 
An ice-contaminated ring decorrelates its reflections, so its merged half-set
CC1/2 falls well below the Bragg trend of its resolution shoulders (e.g.
EP_cs_01-17 2.25A ring CC1/2 0.12 vs shoulders 0.89). After the final merge,
compute per-hexagonal-ice-ring CC1/2 in the ring band (+/- ice width in q=2pi/d)
against the shoulders either side, mask any ring more than 0.05 below its
shoulders (reliable shoulder CC1/2 > 0.5, >=20 reflections each) and re-merge
without them. Weak/absent rings track their neighbours and stay, so clean
crystals are untouched.

Data-driven and robust on /data/rotation_test: 16/18 crystals mask nothing and
are unchanged (every clean crystal, plus icy-but-fine EP_cs_02-10); EP_cs_01-17
masks 6 rings, CC1/2 6.9% -> 28%; CQ066/pding4_003 mask one marginal ring each.
A well-scaled CC1/2 test, replacing the fragile per-image azimuthal cutoffs.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-02 16:06:39 +02:00
..
ADUHistogram.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ADUHistogram.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
AutoIncrVector.h
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
AzimuthalIntegrationMapping.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
AzimuthalIntegrationMapping.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
AzimuthalIntegrationProfile.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
AzimuthalIntegrationProfile.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
AzimuthalIntegrationSettings.cpp
v1.0.0-rc.152 (#62)
2026-06-17 20:36:24 +02:00
AzimuthalIntegrationSettings.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
BraggIntegrationSettings.cpp
integration: remove --reciprocal-profile (proven per-frame dead-end)
2026-07-02 11:39:09 +02:00
BraggIntegrationSettings.h
integration: remove --reciprocal-profile (proven per-frame dead-end)
2026-07-02 11:39:09 +02:00
BrokerStatus.h
v1.0.0-rc.129 (#36)
2026-03-05 22:13:12 +01:00
CheckPath.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
CMakeLists.txt
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ColorScale.cpp
v1.0.0-rc.124 (#31)
2026-02-01 13:29:33 +01:00
ColorScale.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
CompressedImage.cpp
v1.0.0-rc.40
2025-05-28 18:49:27 +02:00
CompressedImage.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
Coord.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
Coord.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
CorrelationCoefficient.cpp
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
CorrelationCoefficient.h
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
CrystalLattice.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
CrystalLattice.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
CUDAWrapper.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
CUDAWrapper.cu
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
CUDAWrapper.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
DarkMaskSettings.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
DarkMaskSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DatasetSettings.cpp
smargon: write chi/phi goniometer position into NXmx transformations
2026-07-01 11:45:08 +02:00
DatasetSettings.h
smargon: write chi/phi goniometer position into NXmx transformations
2026-07-01 11:45:08 +02:00
Definitions.h
merge: mask ice rings whose CC1/2 collapses below their resolution neighbours
2026-07-02 16:06:39 +02:00
DetectorGeometry.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorGeometryFixed.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
DetectorGeometryFixed.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorGeometryModular.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
DetectorGeometryModular.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorModuleGeometry.cpp
v1.0.0-rc.103 (#8)
2025-11-19 09:40:50 +01:00
DetectorModuleGeometry.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorSettings.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
DetectorSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorSetup.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
DetectorSetup.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
DiffractionExperiment.cpp
smargon: write chi/phi goniometer position into NXmx transformations
2026-07-01 11:45:08 +02:00
DiffractionExperiment.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
DiffractionGeometry.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
DiffractionGeometry.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DiffractionSpot.cpp
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DiffractionSpot.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
FileWriterSettings.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
FileWriterSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
GitInfo.cpp.in
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
GitInfo.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
GoniometerAxis.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
GoniometerAxis.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
GridScanSettings.cpp
v1.0.0-rc.104 (#9)
2025-11-19 17:28:10 +01:00
GridScanSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
Histogram.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
hkl_key.h
v1.0.0-rc.124 (#31)
2026-02-01 13:29:33 +01:00
ImageBuffer.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ImageBuffer.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ImageFormatSettings.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
ImageFormatSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
IndexingSettings.cpp
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
IndexingSettings.h
v1.0.0-rc.155 (#65)
2026-06-25 22:01:48 +02:00
InstrumentMetadata.cpp
version 1.0.0-rc.27
2024-12-02 21:17:14 +01:00
InstrumentMetadata.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
JFJochException.h
Compressor: throw on overflow instead of returning a negative size
2026-06-27 08:17:21 +02:00
JFJochMath.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
JFJochMessages.h
smargon: write chi/phi goniometer position into NXmx transformations
2026-07-01 11:45:08 +02:00
JFJochReceiverPlots.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
JFJochReceiverPlots.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
JfjochTCP.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
Logger.cpp
v1.0.0-rc.82
2025-09-22 19:49:39 +02:00
Logger.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ModuleSummation.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
ModuleSummation.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
MovingAverage.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
MovingAverage.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
MultiLinePlot.cpp
v1.0.0-rc.40
2025-05-28 18:49:27 +02:00
MultiLinePlot.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
NetworkAddressConvert.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
NetworkAddressConvert.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
PixelMask.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
PixelMask.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
Plot.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
print_license.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
RawToConvertedGeometry.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
RawToConvertedGeometryCore.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
Reflection.h
ice rings: exclude from scaling, keep in the final merge (recover completeness)
2026-07-02 14:29:37 +02:00
ResolutionShells.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
ResolutionShells.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ROIAzimuthal.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIAzimuthal.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIBox.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIBox.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROICircle.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROICircle.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIDefinition.cpp
version 1.0.0-rc.29
2024-12-08 13:26:13 +01:00
ROIDefinition.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ROIElement.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIElement.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIMap.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIMap.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ScalingSettings.cpp
scaling: express rot3d smooth-g as a rotation range in degrees (XDS DELPHI-like)
2026-06-30 20:00:53 +02:00
ScalingSettings.h
jfjoch_process/scale: default to mmCIF, auto-detect rotation, rot3d partiality
2026-07-02 08:34:50 +02:00
ScanResult.cpp
v1.0.0-rc.44
2025-06-15 17:46:46 +02:00
ScanResult.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ScanResultGenerator.cpp
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ScanResultGenerator.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
SpotToSave.cpp
v1.0.0-rc.72
2025-09-08 20:28:59 +02:00
SpotToSave.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
StatusVector.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
StatusVector.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ThreadSafeFIFO.h
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
time_utc.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
TopPixels.cpp
v1.0.0-rc.121 (#28)
2025-12-12 21:24:20 +01:00
TopPixels.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
UnitCell.cpp
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
UnitCell.h
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
XrayFluorescenceSpectrum.cpp
v1.0.0-rc.81
2025-09-21 19:27:51 +02:00
XrayFluorescenceSpectrum.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ZeroCopyReturnValue.cpp
v1.0.0-rc.128 (#35)
2026-03-03 22:24:44 +01:00
ZeroCopyReturnValue.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ZMQWrappers.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
ZMQWrappers.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00