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Jungfraujoch/reader/JFJochCBFReader.h
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leonarski_f 680c36c20d
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v1.0.0-rc.166 (#76)
* `rugnux --mode calibration` writes `<prefix>.json` beside the `.poni`, whose `dataset_settings` member is a `jfjoch_broker` `dataset_settings` body as it stands.
* `rugnux` and `jfjoch_viewer` read PILATUS miniCBF sweeps natively, without conversion.
* Masters written by other facilities open, including Eiger 1.x and third-party NXmx variants.
* `rugnux` measures the beam centre on every run, and indexes with it when the file's value indexes nothing.
* A detector swung out on a 2theta arm is placed where the file says it stands, and the calibration can hold the tilt fixed.
* `rugnux` writes the unmerged MTZ by default, and a P1 merge beside it, so a wrong space group can be re-merged without reprocessing.
* Significant improvements to symmetry handling in `rugnux`: the lattice, the point group, the setting and the systematic absences.
* The `rugnux` report gives the resolution the CC1/2 fit reached, beside the range the reflections were written to.
* The `rugnux` report gives the twinning statistics measured before the space group was decided, beside the ones measured after.
* The `rugnux` report gives the strong-direction diffraction limit, and warns when CC1/2 is not monotone with resolution.
* `rugnux` ranks screw axes on the evidence their absences carry, rather than on how many control reflections a candidate happens to have.
* Twinning is no longer reported when the L-test contradicts it.
* The `rugnux` report gives the detector tilt, the measured tilt and the direct beam beside the beam centre, and a post-refined beam centre is judged against the run's own measurement rather than the file's.
* `--no-refine-tilt` holds the detector tilt at the value in the file, instead of zeroing it, when the calibration starts from the spots.
* The `jfjoch_viewer` grid scan view draws the cells in the proportion of the scan steps, so the map has the shape of the scanned area.

Reviewed-on: #76
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
2026-09-02 21:17:31 +02:00

55 lines
2.3 KiB
C++

// SPDX-FileCopyrightText: 2026 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
// SPDX-License-Identifier: GPL-3.0-only
#pragma once
#include <string>
#include <vector>
#include "JFJochReader.h"
#include "MiniCBF.h"
// Reads a rotation sweep straight from a directory of PILATUS miniCBF files - the form most
// facilities still archive - with no conversion step and no libcbf.
//
// The sweep's geometry comes from the first file's header; the rotation angle of each image comes
// from its own header, which costs only the bytes up to the binary separator. Images are decoded on
// demand, one per call, so any number of workers can read at once - there is no global lock as there
// is on the HDF5 path, HDF5 not being thread-safe.
//
// A raw CBF carries no analysis results, so this reader has no spots, no reflections and no snapshots;
// the dataset it builds is the geometry, the mask and nothing else, exactly as a plain DECTRIS file
// with no /entry/MX would give.
class JFJochCBFReader : public JFJochReader {
std::vector<std::string> files_;
std::shared_ptr<JFJochReaderDataset> dataset_;
minicbf::Header header0_;
bool LoadImage_i(std::shared_ptr<JFJochReaderDataset> &dataset,
DataMessage &message,
std::vector<uint8_t> &buffer,
int64_t image_number,
bool update_dataset) override;
// Decodes one image into the caller's byte buffer (RawByteBuffer or std::vector<uint8_t>) and
// returns the image that points at it.
template <class Buffer>
CompressedImage DecodeInto(int64_t image_number, Buffer &buffer) const;
public:
~JFJochCBFReader() override = default;
// True if the path names something this reader can open: a miniCBF file, or a directory holding
// at least one. Cheap - it reads a few kB at most.
static bool CanRead(const std::string &path);
// path is a directory of *.cbf, or one *.cbf inside the sweep to take the whole directory from.
void ReadFiles(const std::string &path);
[[nodiscard]] uint64_t GetNumberOfImages() const override;
void Close() override;
std::shared_ptr<JFJochReaderRawImage> GetRawImage(int64_t image_number) override;
[[nodiscard]] std::vector<SpotToSave> ReadSpots(int64_t image) const override;
};