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Jungfraujoch/image_analysis/geom_refinement/RingOptimizer.h
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v1.0.0-rc.166 (#76)
* `rugnux --mode calibration` writes `<prefix>.json` beside the `.poni`, whose `dataset_settings` member is a `jfjoch_broker` `dataset_settings` body as it stands.
* `rugnux` and `jfjoch_viewer` read PILATUS miniCBF sweeps natively, without conversion.
* Masters written by other facilities open, including Eiger 1.x and third-party NXmx variants.
* `rugnux` measures the beam centre on every run, and indexes with it when the file's value indexes nothing.
* A detector swung out on a 2theta arm is placed where the file says it stands, and the calibration can hold the tilt fixed.
* `rugnux` writes the unmerged MTZ by default, and a P1 merge beside it, so a wrong space group can be re-merged without reprocessing.
* Significant improvements to symmetry handling in `rugnux`: the lattice, the point group, the setting and the systematic absences.
* The `rugnux` report gives the resolution the CC1/2 fit reached, beside the range the reflections were written to.
* The `rugnux` report gives the twinning statistics measured before the space group was decided, beside the ones measured after.
* The `rugnux` report gives the strong-direction diffraction limit, and warns when CC1/2 is not monotone with resolution.
* `rugnux` ranks screw axes on the evidence their absences carry, rather than on how many control reflections a candidate happens to have.
* Twinning is no longer reported when the L-test contradicts it.
* The `rugnux` report gives the detector tilt, the measured tilt and the direct beam beside the beam centre, and a post-refined beam centre is judged against the run's own measurement rather than the file's.
* `--no-refine-tilt` holds the detector tilt at the value in the file, instead of zeroing it, when the calibration starts from the spots.
* The `jfjoch_viewer` grid scan view draws the cells in the proportion of the scan steps, so the map has the shape of the scanned area.

Reviewed-on: #76
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
2026-09-02 21:17:31 +02:00

57 lines
2.9 KiB
C++

// SPDX-FileCopyrightText: 2025 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
// SPDX-License-Identifier: GPL-3.0-only
#pragma once
#include <vector>
#include "../../common/DiffractionGeometry.h"
struct RingOptimizerInput {
float x;
float y;
double q_expected;
};
// What the ring fit knows about its own answer, from the covariance of the converged problem.
//
// The beam centre and the tilt are not independent: both displace a ring's radius as cos(phi), and
// only how that amplitude scales with the ring's radius tells them apart, which takes two well-sampled
// rings. On one ring they are exactly degenerate; on two they are merely badly correlated, and the fit
// still returns an answer - it just spends tens of pixels of beam centre to buy a tilt the data cannot
// support. The sigmas below say when that has happened and the correlations say why.
//
// Sigmas are in each parameter's own unit and are scaled by the residual variance of THIS fit
// (chi2_per_dof), so they are the usual "how far could this parameter move before the fit got visibly
// worse" and not Ceres' bare (J^T J)^-1. A tilt held fixed reports sigma 0 - it was not a parameter.
struct RingFitUncertainty {
bool valid = false; // false if the covariance could not be computed - itself a verdict:
// the problem is exactly rank-deficient at the solution
double sigma_beam_x_pxl = 0.0;
double sigma_beam_y_pxl = 0.0;
double sigma_distance_mm = 0.0;
double sigma_rot1_rad = 0.0;
double sigma_rot2_rad = 0.0;
// The two degenerate pairs. rot1 tips the detector about the vertical, so it trades against the
// beam centre in x; rot2 tips it about the horizontal and trades against y. |corr| approaching 1
// is the signature of a tilt the rings do not separate from a beam-centre shift.
double corr_beam_x_rot1 = 0.0;
double corr_beam_y_rot2 = 0.0;
double chi2_per_dof = 0.0; // in the residual's own (q^2) units - a scale, not a goodness of fit
int free_parameters = 0;
};
class RingOptimizer {
DiffractionGeometry reference;
bool refine_tilt;
public:
// refine_tilt = false holds the detector tilt (rot1/rot2) at the value the geometry came in with
// and fits only the beam centre and the distance. A tilted PONI is exact but not every consumer
// accepts one - XDS has no place to put it - so a calibration meant for such a program is better
// measured with the tilt pinned than with it refined and then dropped.
RingOptimizer(const DiffractionGeometry& geom, bool refine_tilt = true);
// unc, when given, receives the covariance of the converged fit. Computing it is a 5x5 SVD and
// costs nothing next to the solve, so there is no option to switch it off - pass nullptr instead.
DiffractionGeometry Run(const std::vector<RingOptimizerInput> &input,
RingFitUncertainty *unc = nullptr);
};