Files
Jungfraujoch/common
leonarski_fandClaude Opus 5.5 451fd25857 Panel layout stage 5: the XFEL reader hands up the stored frame and its panel table
A detector of two or more panels is no longer assembled. The image is the stored frame, and each panel of
the geometry (CrystFEL .geom or the file's own panel table) is a DetectorModule over its box of the frame,
at its true placement on the detector plane: fractional origin, the panel's own axes, no snapping to an
image axis or a whole pixel. Pixels on no panel, edge, bad-region and file-masked pixels are masked in the
stored layout. The block scatter (a transpose for the 90-degree-turned JUNGFRAU and MPCCD panels) is gone
for these inputs. A single panel keeps the old block path, so single-panel CXI files are unchanged.

Signed-integer frames in their own units (gain 1, no per-frame mask) go up with no copy: a bitshuffle/LZ4
chunk still compressed, for the GPU preprocessor's BSLZ4 decoder (int16's smallest value is its error
value there, so the type-min rule holds), a deflated one inflated outside the HDF5 lock straight into the
caller's buffer. Everything else (float, unsigned, a gain, a per-frame mask) is converted once in stored
order. A float NaN/inf now reads as no measurement (INT32_MIN) instead of 0, and values past int32 are
clamped before the cast.

Also: SpotToSave.panel is filled from DiffractionSpot::Panel(), so AssignModules takes the panel the spot
was found on. PreviewImage_PanelLayout expects stage 3's PlaneRasterOf raster (merge fallout).

Main pass, 2000 frames, vs the CCD-reader build: JF4M int16 bslz4 465 -> 1860 frames/s, JF16M 105 -> 1111,
MPCCD 212 -> 252; flat Jungfraujoch data unchanged.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_015CeEGgpKdfkCTJb3YNMJcu
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