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href="../../WEB_FRONTEND.html" class=md-nav__link >Web frontend</a> <li class=md-nav__item > <a href="../../TESTS.html" class=md-nav__link >Tests</a> <li class=md-nav__item > <span class="md-nav__link caption"><span class=caption-text >OpenAPI Python client</span></span> <li class=md-nav__item > <a href="../README.html" class=md-nav__link >jfjoch-client</a> <li class=md-nav__item > <a href="../README.html#license-clarification" class=md-nav__link >License Clarification</a> <li class=md-nav__item > <a href=DefaultApi.html class=md-nav__link >jfjoch_client.DefaultApi</a> <li class=md-nav__item > <a href="DefaultApi.html#cancel-post" class=md-nav__link ><strong>cancel_post</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-azim-int-get" class=md-nav__link ><strong>config_azim_int_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-azim-int-put" class=md-nav__link ><strong>config_azim_int_put</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-dark-mask-get" class=md-nav__link ><strong>config_dark_mask_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-dark-mask-put" class=md-nav__link ><strong>config_dark_mask_put</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-detector-get" class=md-nav__link ><strong>config_detector_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-detector-put" class=md-nav__link ><strong>config_detector_put</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-file-writer-get" class=md-nav__link ><strong>config_file_writer_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-file-writer-put" class=md-nav__link ><strong>config_file_writer_put</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-image-format-conversion-post" class=md-nav__link ><strong>config_image_format_conversion_post</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-image-format-get" class=md-nav__link ><strong>config_image_format_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-image-format-put" class=md-nav__link ><strong>config_image_format_put</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-image-format-raw-post" class=md-nav__link ><strong>config_image_format_raw_post</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-indexing-get" class=md-nav__link ><strong>config_indexing_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-indexing-put" class=md-nav__link ><strong>config_indexing_put</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-instrument-get" class=md-nav__link ><strong>config_instrument_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-instrument-put" class=md-nav__link ><strong>config_instrument_put</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-internal-generator-image-put" class=md-nav__link ><strong>config_internal_generator_image_put</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-internal-generator-image-tiff-put" class=md-nav__link ><strong>config_internal_generator_image_tiff_put</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-mask-get" class=md-nav__link ><strong>config_mask_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-mask-tiff-get" class=md-nav__link ><strong>config_mask_tiff_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-roi-get" class=md-nav__link ><strong>config_roi_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-roi-put" class=md-nav__link ><strong>config_roi_put</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-select-detector-get" class=md-nav__link ><strong>config_select_detector_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-select-detector-put" class=md-nav__link ><strong>config_select_detector_put</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-spot-finding-get" class=md-nav__link ><strong>config_spot_finding_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-spot-finding-put" class=md-nav__link ><strong>config_spot_finding_put</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-user-mask-get" class=md-nav__link ><strong>config_user_mask_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-user-mask-put" class=md-nav__link ><strong>config_user_mask_put</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-user-mask-tiff-get" class=md-nav__link ><strong>config_user_mask_tiff_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-user-mask-tiff-put" class=md-nav__link ><strong>config_user_mask_tiff_put</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-zeromq-metadata-get" class=md-nav__link ><strong>config_zeromq_metadata_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-zeromq-metadata-put" class=md-nav__link ><strong>config_zeromq_metadata_put</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-zeromq-preview-get" class=md-nav__link ><strong>config_zeromq_preview_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#config-zeromq-preview-put" class=md-nav__link ><strong>config_zeromq_preview_put</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#deactivate-post" class=md-nav__link ><strong>deactivate_post</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#detector-status-get" class=md-nav__link ><strong>detector_status_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#fpga-status-get" class=md-nav__link ><strong>fpga_status_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#image-buffer-clear-post" class=md-nav__link ><strong>image_buffer_clear_post</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#image-buffer-image-cbor-get" class=md-nav__link ><strong>image_buffer_image_cbor_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#image-buffer-image-jpeg-get" class=md-nav__link ><strong>image_buffer_image_jpeg_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#image-buffer-image-tiff-get" class=md-nav__link ><strong>image_buffer_image_tiff_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#image-buffer-start-cbor-get" class=md-nav__link ><strong>image_buffer_start_cbor_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#image-buffer-status-get" class=md-nav__link ><strong>image_buffer_status_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#image-pusher-status-get" class=md-nav__link ><strong>image_pusher_status_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#initialize-post" class=md-nav__link ><strong>initialize_post</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#pedestal-post" class=md-nav__link ><strong>pedestal_post</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#preview-pedestal-tiff-get" class=md-nav__link ><strong>preview_pedestal_tiff_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#preview-plot-bin-get" class=md-nav__link ><strong>preview_plot_bin_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#preview-plot-get" class=md-nav__link ><strong>preview_plot_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#result-scan-get" class=md-nav__link ><strong>result_scan_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#start-post" class=md-nav__link ><strong>start_post</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#statistics-calibration-get" class=md-nav__link ><strong>statistics_calibration_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#statistics-data-collection-get" class=md-nav__link ><strong>statistics_data_collection_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#statistics-get" class=md-nav__link ><strong>statistics_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#status-get" class=md-nav__link ><strong>status_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#trigger-post" class=md-nav__link ><strong>trigger_post</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#version-get" class=md-nav__link ><strong>version_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#wait-till-done-post" class=md-nav__link ><strong>wait_till_done_post</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#wait-until-running-post" class=md-nav__link ><strong>wait_until_running_post</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#xfel-event-code-get" class=md-nav__link ><strong>xfel_event_code_get</strong></a> <li class=md-nav__item > <a href="DefaultApi.html#xfel-pulse-id-get" class=md-nav__link ><strong>xfel_pulse_id_get</strong></a> </ul> </nav> </div> </div> </div> <div class="md-sidebar md-sidebar--secondary" data-md-component=toc > <div class=md-sidebar__scrollwrap > <div class=md-sidebar__inner > <nav class="md-nav md-nav--secondary"> <ul class=md-nav__list data-md-scrollfix=""> </ul> </nav> </div> </div> </div> <div class=md-content > <article class="md-content__inner md-typeset" role=main > <section class="tex2jax_ignore mathjax_ignore" id=indexingsettings > <h1 id=python-client-docs-indexingsettings--page-root >IndexingSettings<a class=headerlink href="#python-client-docs-indexingsettings--page-root" title="Link to this heading"></a></h1> <p>Settings for crystallography indexing</p> <section id=properties > <h2 id=properties >Properties<a class=headerlink href="#properties" title="Link to this heading"></a></h2> <table> <thead> <tr class=row-odd ><th class=head ><p>Name</p> <th class=head ><p>Type</p> <th class=head ><p>Description</p> <th class=head ><p>Notes</p> <tr class=row-even ><td><p><strong>algorithm</strong></p> <td><p><a class="reference internal" href=IndexingAlgorithm.html ><span class="std std-doc"><strong>IndexingAlgorithm</strong></span></a></p> <td><p></p> <td><p>[default to IndexingAlgorithm.FFBIDX]</p> <tr class=row-odd ><td><p><strong>fft_max_unit_cell_a</strong></p> <td><p><strong>float</strong></p> <td><p>Largest unit cell to be indexed by FFT algorithm; parameter value affects execution time of FFT</p> <td><p>[default to 250]</p> <tr class=row-even ><td><p><strong>fft_min_unit_cell_a</strong></p> <td><p><strong>float</strong></p> <td><p>Smallest unit cell to be indexed by FFT algorithm; parameter value affects execution time of FFT</p> <td><p>[default to 10.0]</p> <tr class=row-odd ><td><p><strong>fft_high_resolution_a</strong></p> <td><p><strong>float</strong></p> <td><p>Highest resolution of spots used for FFT algorithm; parameter value affects execution time of FFT. There is also correlation between smallest unit cell and max resolution, which need to be checked for very small systems.</p> <td><p>[default to 2.0]</p> <tr class=row-even ><td><p><strong>fft_num_vectors</strong></p> <td><p><strong>int</strong></p> <td><p>Number of search directions for the FFT algorithm; parameter value affects execution time of FFT.</p> <td><p>[default to 16384]</p> <tr class=row-odd ><td><p><strong>tolerance</strong></p> <td><p><strong>float</strong></p> <td><p>Acceptance tolerance for spots after the indexing run - the larger the number, the more spots will be accepted</p> <td><p></p> <tr class=row-even ><td><p><strong>thread_count</strong></p> <td><p><strong>int</strong></p> <td><p>Thread count for indexing algorithm</p> <td><p></p> <tr class=row-odd ><td><p><strong>geom_refinement_algorithm</strong></p> <td><p><a class="reference internal" href=GeomRefinementAlgorithm.html ><span class="std std-doc"><strong>GeomRefinementAlgorithm</strong></span></a></p> <td><p></p> <td><p></p> <tr class=row-even ><td><p><strong>unit_cell_dist_tolerance</strong></p> <td><p><strong>float</strong></p> <td><p>Relative distance tolerance for unit cell vs. reference; Lattices outside given tolerance will be ignored</p> <td><p>[default to 0.05]</p> <tr class=row-odd ><td><p><strong>viable_cell_min_spots</strong></p> <td><p><strong>int</strong></p> <td><p>Minimum number of indexed spots required for a cell to be considered viable</p> <td><p>[default to 10]</p> <tr class=row-even ><td><p><strong>index_ice_rings</strong></p> <td><p><strong>bool</strong></p> <td><p>Include spots marked as ice rings in the indexing run. If `dataset_settings` doesn’t have `detect_ice_rings` on, this option will have no effect on processing.</p> <td><p>[default to False]</p> <tr class=row-odd ><td><p><strong>rotation_indexing</strong></p> <td><p><strong>bool</strong></p> <td><p></p> <td><p>[default to False]</p> <tr class=row-even ><td><p><strong>rotation_indexing_min_angular_range_deg</strong></p> <td><p><strong>float</strong></p> <td><p></p> <td><p>[default to 20.0]</p> <tr class=row-odd ><td><p><strong>rotation_indexing_angular_stride_deg</strong></p> <td><p><strong>float</strong></p> <td><p></p> <td><p>[default to 0.5]</p> <tr class=row-even ><td><p><strong>blocking</strong></p> <td><p><strong>bool</strong></p> <td><p>Indexing in Jungfraujoch goes with a dedicated thread pool. If set to false, the thread pool is non-blocking, i.e. if there are no threads available, image indexing will be skipped. This option is recommended for real-time processing at high frame rates. If set to true, the thread pool will block until a thread is available.</p> <td><p>[default to True]</p> </table> </section> <section id=example > <h2 id=example >Example<a class=headerlink href="#example" title="Link to this heading"></a></h2> <div class="highlight-python notranslate"><div class=highlight ><pre><span></span><span class=kn >from</span> <span class=nn >jfjoch_client.models.indexing_settings</span> <span class=kn >import</span> <span class=n >IndexingSettings</span>
<span class=c1 ># TODO update the JSON string below</span>
<span class=n >json</span> <span class=o >=</span> <span class=s2 >"</span><span class=si >{}</span><span class=s2 >"</span>
<span class=c1 ># create an instance of IndexingSettings from a JSON string</span>
<span class=n >indexing_settings_instance</span> <span class=o >=</span> <span class=n >IndexingSettings</span><span class=o >.</span><span class=n >from_json</span><span class=p >(</span><span class=n >json</span><span class=p >)</span>
<span class=c1 ># print the JSON string representation of the object</span>
<span class=nb >print</span><span class=p >(</span><span class=n >IndexingSettings</span><span class=o >.</span><span class=n >to_json</span><span class=p >())</span>
<span class=c1 ># convert the object into a dict</span>
<span class=n >indexing_settings_dict</span> <span class=o >=</span> <span class=n >indexing_settings_instance</span><span class=o >.</span><span class=n >to_dict</span><span class=p >()</span>
<span class=c1 ># create an instance of IndexingSettings from a dict</span>
<span class=n >indexing_settings_from_dict</span> <span class=o >=</span> <span class=n >IndexingSettings</span><span class=o >.</span><span class=n >from_dict</span><span class=p >(</span><span class=n >indexing_settings_dict</span><span class=p >)</span>
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