leonarski_fandClaude Opus 4.8
e7fbeb527f
Reconcile docs/CPU_DATA_ANALYSIS.md and docs/RUGNUX.md with the current image_analysis/ and rugnux CLI (verified section-by-section against the code): unified profile-fit Bragg integration engine, multi-lattice indexing, azimuthal phi binning, radial parallax/bandwidth profile with sub-pixel centring, rot3d capture-fraction handling, automatic CC1/2 resolution cutoff, and the new rugnux options; fix the section numbering and cross-references; remove the never-implemented French-Wilson and still-partiality descriptions. Delete the stale in-source design notes (ICE_RING_DETECTION, BRAGG_INTEGRATION_ENGINE, NEXTGEN_INTEGRATOR) and fix the two code comments that pointed at them; the BraggIntegrationEngine header no longer claims it is 'not yet wired'. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
42 lines
1.7 KiB
C++
42 lines
1.7 KiB
C++
// SPDX-FileCopyrightText: 2025 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
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// SPDX-License-Identifier: GPL-3.0-only
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#pragma once
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#include <optional>
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// Spot-intensity extraction method used by the Bragg integration engine. ProfileGaussian (default)
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// profile-fits with a measured-width Gaussian (Kabsch-style) - more accurate intensities than the
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// classical uniform BoxSum; validated on HEWL anomalous (stronger S/Cl peaks vs box-sum). BoxSum is
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// the simpler, faster fallback. ProfileEmpirical learns the profile per resolution shell from strong
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// spots - see docs/CPU_DATA_ANALYSIS.md (Bragg integration).
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enum class IntegratorMode { BoxSum, ProfileGaussian, ProfileEmpirical };
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class BraggIntegrationSettings {
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IntegratorMode integrator_mode = IntegratorMode::ProfileGaussian;
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float r_1 = 4;
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float r_2 = 6;
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float r_3 = 10;
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float d_min_limit_A = 1.0;
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std::optional<float> fixed_profile_radius;
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float minimum_sigma_in_regards_to_i = 0.02;
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public:
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BraggIntegrationSettings& R1(float input);
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BraggIntegrationSettings& R2(float input);
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BraggIntegrationSettings& R3(float input);
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BraggIntegrationSettings& DMinLimit_A(float input);
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BraggIntegrationSettings& FixedProfileRadius_recipA(std::optional<float> input);
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BraggIntegrationSettings& Integrator(IntegratorMode input);
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[[nodiscard]] IntegratorMode GetIntegrator() const;
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[[nodiscard]] float GetR1() const;
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[[nodiscard]] float GetR2() const;
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[[nodiscard]] float GetR3() const;
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[[nodiscard]] std::optional<float> GetFixedProfileRadius_recipA() const;
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[[nodiscard]] float GetDMinLimit_A() const;
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[[nodiscard]] float GetMinimumSigmaInRegardsToI() const;
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};
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