1257 lines
44 KiB
C++
1257 lines
44 KiB
C++
// Copyright (2019-2022) Paul Scherrer Institute
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// SPDX-License-Identifier: GPL-3.0-or-later
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#include <cmath>
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#include "NetworkAddressConvert.h"
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#include "JFJochCompressor.h" // For ZSTD_USE_JFJOCH_RLE
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#include "GitInfo.h"
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#include "DiffractionExperiment.h"
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#include "JFJochException.h"
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#include "../compression/MaxCompressedSize.h"
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#define check_max(param, val, max) if ((val) > (max)) throw JFJochException(JFJochExceptionCategory::InputParameterAboveMax, param)
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#define check_min(param, val, min) if ((val) < (min)) throw JFJochException(JFJochExceptionCategory::InputParameterBelowMin, param)
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DiffractionExperiment::DiffractionExperiment(const JFJochProtoBuf::JungfraujochSettings &settings) : DiffractionExperiment() {
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Import(settings);
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}
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DiffractionExperiment& DiffractionExperiment::Import(const JFJochProtoBuf::JungfraujochSettings &settings) {
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internal = settings.internal();
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dataset = settings.dataset();
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return *this;
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}
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DiffractionExperiment::operator JFJochProtoBuf::JungfraujochSettings() const {
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JFJochProtoBuf::JungfraujochSettings settings;
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*settings.mutable_dataset() = dataset;
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*settings.mutable_internal() = internal;
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return settings;
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}
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DiffractionExperiment::DiffractionExperiment() : DiffractionExperiment(DetectorGeometry(8, 2))
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{}
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DiffractionExperiment::DiffractionExperiment(const DetectorSetup& det_setup) {
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dataset.set_photon_energy_kev(WVL_1A_IN_KEV);
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dataset.set_detector_distance_mm(100);
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dataset.mutable_scattering_vector()->set_x(0);
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dataset.mutable_scattering_vector()->set_y(0);
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dataset.mutable_scattering_vector()->set_z(1);
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dataset.set_data_file_count(1);
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dataset.set_file_prefix("test");
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dataset.set_ntrigger(1);
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dataset.set_images_per_trigger(1);
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dataset.set_summation(1);
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dataset.set_space_group_number(0); // not set
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dataset.set_compression(JFJochProtoBuf::BSHUF_LZ4);
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dataset.set_rad_int_polarization_corr(false);
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dataset.set_rad_int_solid_angle_corr(false);
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dataset.set_save_calibration(false);
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internal.set_debug_pixel_mask(false);
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internal.set_ndatastreams(1);
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internal.set_frame_time_us(MIN_FRAME_TIME_HALF_SPEED_IN_US);
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internal.set_count_time_us(MIN_FRAME_TIME_HALF_SPEED_IN_US - READOUT_TIME_IN_US);
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internal.set_frame_time_pedestalg1g2_us(FRAME_TIME_PEDE_G1G2_IN_US);
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internal.set_mask_chip_edges(false);
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internal.set_mask_module_edges(false);
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internal.set_preview_period_us(1000*1000); // 1s / 1 Hz
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internal.set_spot_finding_period_us(5*1000); // 5 ms / 200 Hz
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internal.set_low_q(0.1);
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internal.set_high_q(5.0);
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internal.set_q_spacing(0.05);
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internal.set_ipv4_base_addr(0x0132010a);
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internal.set_git_sha1(jfjoch_git_sha1());
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internal.set_git_date(jfjoch_git_date());
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internal.set_storage_cells(1);
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internal.set_storage_cell_start(15);
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internal.set_storage_cell_delay_ns(10*1000);
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Detector(det_setup);
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Mode(DetectorMode::Conversion);
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}
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// setter functions
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DiffractionExperiment &DiffractionExperiment::Detector(const DetectorSetup &input) {
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*internal.mutable_detector() = input;
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::Mode(DetectorMode input) {
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switch (input) {
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case DetectorMode::Conversion:
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internal.set_mode(JFJochProtoBuf::CONVERSION);
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break;
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case DetectorMode::Raw:
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internal.set_mode(JFJochProtoBuf::RAW);
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break;
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case DetectorMode::PedestalG0:
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internal.set_mode(JFJochProtoBuf::PEDESTAL_G0);
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break;
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case DetectorMode::PedestalG1:
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internal.set_mode(JFJochProtoBuf::PEDESTAL_G1);
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break;
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case DetectorMode::PedestalG2:
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internal.set_mode(JFJochProtoBuf::PEDESTAL_G2);
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break;
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}
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::DataStreams(int64_t input) {
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check_max("Number of data streams", input, 7);
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check_min("Number of data streams", input, 1);
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internal.set_ndatastreams(input);
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::ImagesPerTrigger(int64_t input) {
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check_max("Total number of images", input, 10*1000*1000);
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check_min("Total number of images", input, 0);
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dataset.set_images_per_trigger(input);
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::NumTriggers(int64_t input) {
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check_max("Total number of triggers", input, 10*1000*1000);
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check_min("Total number of triggers", input, 1);
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dataset.set_ntrigger(input);
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::FrameTime(std::chrono::microseconds in_frame_time,
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std::chrono::microseconds in_count_time) {
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check_min("Frame time (us)", in_frame_time.count(), MIN_FRAME_TIME_FULL_SPEED_IN_US);
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check_max("Frame time (us)", in_frame_time.count(), MAX_FRAME_TIME);
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check_max("Count time (us)", in_count_time.count(), in_frame_time.count() - READOUT_TIME_IN_US);
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if (in_count_time.count() != 0) {
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check_min("Count time (us)", in_count_time.count(), MIN_COUNT_TIME_IN_US);
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}
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internal.set_frame_time_us(in_frame_time.count());
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if (in_count_time.count() == 0)
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internal.set_count_time_us(in_frame_time.count() - READOUT_TIME_IN_US);
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else
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internal.set_count_time_us(in_count_time.count());
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::Summation(int64_t input) {
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check_min("Summation", input, 1);
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check_max("Summation", input, MAX_SUMMATION);
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dataset.set_summation(input);
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return *this;
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}
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DiffractionExperiment & DiffractionExperiment::ImageTimeUs(std::chrono::microseconds image_time) {
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check_min("Image time (us)", image_time.count(), MIN_FRAME_TIME_FULL_SPEED_IN_US); // Exclude negative numbers and zero
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if ( image_time.count() % GetFrameTime().count() != 0)
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throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
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"Image time must be multiple of frame time");
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Summation(image_time.count() / GetFrameTime().count());
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::PedestalG1G2FrameTime(std::chrono::microseconds input) {
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check_min("Pedestal G1G2 frame time (us) ", input.count(), MIN_FRAME_TIME_FULL_SPEED_IN_US);
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internal.set_frame_time_pedestalg1g2_us(input.count());
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::PedestalG0Frames(int64_t input) {
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check_min("Pedestal G0 frames", input, 0);
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// Max?
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internal.set_pedestal_g0_frames(input);
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::PedestalG1Frames(int64_t input) {
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check_min("Pedestal G1 frames", input, 0);
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internal.set_pedestal_g1_frames(input);
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::PedestalG2Frames(int64_t input) {
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check_min("Pedestal G2 frames", input, 0);
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internal.set_pedestal_g2_frames(input);
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::PhotonEnergy_keV(float input) {
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check_min("Energy (keV)", input, MIN_ENERGY);
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check_max("Energy (keV)", input, MAX_ENERGY);
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dataset.set_photon_energy_kev(input);
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::BeamX_pxl(float input) {
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dataset.set_beam_x_pxl(input);
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::BeamY_pxl(float input) {
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dataset.set_beam_y_pxl(input);
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::DetectorDistance_mm(float input) {
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check_min("Detector distance (mm)", input, 1);
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dataset.set_detector_distance_mm(input);
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::ScatteringVector(Coord input) {
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auto c = input.Normalize();
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dataset.mutable_scattering_vector()->set_x(c.x);
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dataset.mutable_scattering_vector()->set_y(c.y);
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dataset.mutable_scattering_vector()->set_z(c.z);
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::ScatteringVector() {
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dataset.clear_scattering_vector();
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::FilePrefix(std::string input) {
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// File prefix with front slash is not allowed for security reasons
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if (input.front() == '/')
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throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
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"Path cannot start with slash");
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if (input.substr(0,3) == "../")
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throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
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"Path cannot start with ../");
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if (input.find("/../") != std::string::npos)
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throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
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"Path cannot contain /../");
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if ((input.find("_master.h5") == input.length() - 10) && (input.length() > 10))
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dataset.set_file_prefix(input.substr(0, input.length() - 10));
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else
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dataset.set_file_prefix(input);
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::DataFileCount(int64_t input) {
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check_min("File count", input, 1);
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check_max("File count", input, 1000);
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dataset.set_data_file_count(input);
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::UseInternalPacketGenerator(bool input) {
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internal.set_internal_fpga_packet_generator(input);
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::IPv4BaseAddr(std::string input) {
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internal.set_ipv4_base_addr(IPv4AddressFromStr(input));
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::MaskModuleEdges(bool input) {
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internal.set_mask_module_edges(input);
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::Compression(JFJochProtoBuf::Compression input) {
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dataset.set_compression(input);
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::MaskChipEdges(bool input) {
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internal.set_mask_chip_edges(input);
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return *this;
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}
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DiffractionExperiment& DiffractionExperiment::LowResForRadialInt_A(float input) {
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check_min("Low Resolution for radial integration", input, 0.1);
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check_max("Low Resolution for radial integration", input, 500.0);
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internal.set_low_q(2 * static_cast<float>(M_PI) / input);
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return *this;
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}
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DiffractionExperiment& DiffractionExperiment::HighResForRadialInt_A(float input) {
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check_min("High Resolution for radial integration", input, 0.1);
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check_max("High Resolution for radial integration", input, 500.0);
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internal.set_high_q(2 * static_cast<float>(M_PI) / input);
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return *this;
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}
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DiffractionExperiment& DiffractionExperiment::LowQForRadialInt_recipA(float input) {
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check_min("Low Q for radial integration", input, 0.001);
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check_max("Low Q for radial integration", input, 10.0);
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internal.set_low_q(input);
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return *this;
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}
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DiffractionExperiment& DiffractionExperiment::HighQForRadialInt_recipA(float input) {
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check_min("High Q for radial integration", input, 0.001);
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check_max("High Q for radial integration", input, 10.0);
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internal.set_high_q(input);
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return *this;
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}
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DiffractionExperiment& DiffractionExperiment::QSpacingForRadialInt_recipA(float input) {
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check_min("Q spacing for radial integration", input, 0.01);
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internal.set_q_spacing(input);
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::SetUnitCell(const JFJochProtoBuf::UnitCell &cell) {
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*dataset.mutable_unit_cell() = cell;
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::SetUnitCell(const UnitCell &cell) {
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JFJochProtoBuf::UnitCell tmp;
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tmp.set_a(cell.a);
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tmp.set_b(cell.b);
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tmp.set_c(cell.c);
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tmp.set_alpha(cell.alpha);
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tmp.set_beta(cell.beta);
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tmp.set_gamma(cell.gamma);
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return SetUnitCell(tmp);
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}
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DiffractionExperiment &DiffractionExperiment::SetUnitCell() {
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dataset.clear_unit_cell();
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::PreviewPeriod(std::chrono::microseconds input) {
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check_min("Preview image generation period", input.count(), 0);
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internal.set_preview_period_us(input.count());
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::SpotFindingPeriod(std::chrono::microseconds input) {
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check_min("Spot finding analysis period", input.count(), 0);
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internal.set_spot_finding_period_us(input.count());
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::SpaceGroupNumber(int64_t input) {
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check_min("Space group number", input, 0);
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check_max("Space group number", input, 230);
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dataset.set_space_group_number(input);
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::StorageCells(int64_t input) {
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check_min("Storage cell number", input, 1);
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check_max("Storage cell number", input, 16);
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if ((input != 1) && (input != 2) && (input != 4) && (input != 8) && (input != 16))
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throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
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"Storage cell count invalid, must be power of 2");
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internal.set_storage_cells(input);
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::StorageCellStart(int64_t input) {
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check_min("Start storage cell", input, 0);
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check_max("Start storage cell", input, 15);
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internal.set_storage_cell_start(input);
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return *this;
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}
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DiffractionExperiment &DiffractionExperiment::SampleName(std::string input) {
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dataset.set_sample_name(input);
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return *this;
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}
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// getter functions
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int64_t DiffractionExperiment::GetNumTriggers() const {
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switch (GetDetectorMode()) {
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case DetectorMode::Conversion:
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case DetectorMode::Raw:
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return dataset.ntrigger();
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case DetectorMode::PedestalG0:
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if (GetPedestalWithExternalTrigger())
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return internal.pedestal_g0_frames();
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else
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return 1;
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case DetectorMode::PedestalG1:
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if (GetPedestalWithExternalTrigger())
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return internal.pedestal_g1_frames();
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else
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return 1;
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case DetectorMode::PedestalG2:
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if (GetPedestalWithExternalTrigger())
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return internal.pedestal_g2_frames();
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else
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return 1;
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default:
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return 1;
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}
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}
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DetectorMode DiffractionExperiment::GetDetectorMode() const {
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switch (internal.mode()) {
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case JFJochProtoBuf::RAW:
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return DetectorMode::Raw;
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case JFJochProtoBuf::PEDESTAL_G0:
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return DetectorMode::PedestalG0;
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case JFJochProtoBuf::PEDESTAL_G1:
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return DetectorMode::PedestalG1;
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case JFJochProtoBuf::PEDESTAL_G2:
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return DetectorMode::PedestalG2;
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default:
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case JFJochProtoBuf::CONVERSION:
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return DetectorMode::Conversion;
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}
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}
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int64_t DiffractionExperiment::GetSummation() const {
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if (GetDetectorMode() == DetectorMode::Conversion) {
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if (dataset.has_image_time_us())
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throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
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"Internally DiffractionExperiment shouldn't use image_time_us");
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return dataset.summation();
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} else
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return 1;
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}
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std::chrono::microseconds DiffractionExperiment::GetFrameTime() const {
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switch (GetDetectorMode()) {
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case DetectorMode::PedestalG1:
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case DetectorMode::PedestalG2:
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return std::chrono::microseconds(internal.frame_time_pedestalg1g2_us());
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case DetectorMode::Conversion:
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case DetectorMode::Raw:
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case DetectorMode::PedestalG0:
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default:
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return std::chrono::microseconds(internal.frame_time_us());
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}
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}
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std::chrono::microseconds DiffractionExperiment::GetImageTime() const {
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switch (GetDetectorMode()) {
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case DetectorMode::PedestalG1:
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case DetectorMode::PedestalG2:
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return std::chrono::microseconds(internal.frame_time_pedestalg1g2_us());
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case DetectorMode::Conversion:
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return GetFrameTime() * GetSummation();
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case DetectorMode::Raw:
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case DetectorMode::PedestalG0:
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default:
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return GetFrameTime();
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}
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}
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int64_t DiffractionExperiment::GetImageNum() const {
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switch (GetDetectorMode()) {
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case DetectorMode::Conversion:
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case DetectorMode::Raw:
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return GetImageNumPerTrigger() * GetNumTriggers();
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case DetectorMode::PedestalG0:
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case DetectorMode::PedestalG1:
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case DetectorMode::PedestalG2:
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default:
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return 0;
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}
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}
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int64_t DiffractionExperiment::GetImageNumPerTrigger() const {
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switch (GetDetectorMode()) {
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|
case DetectorMode::Conversion:
|
|
case DetectorMode::Raw:
|
|
if (GetStorageCellNumber() > 1)
|
|
return GetStorageCellNumber();
|
|
return GetFrameNumPerTrigger() / GetSummation();
|
|
case DetectorMode::PedestalG0:
|
|
case DetectorMode::PedestalG1:
|
|
case DetectorMode::PedestalG2:
|
|
default:
|
|
return 0;
|
|
}
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetFrameNum() const {
|
|
return GetFrameNumPerTrigger() * GetNumTriggers();
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetFrameNumPerTrigger() const {
|
|
switch (GetDetectorMode()) {
|
|
case DetectorMode::Conversion:
|
|
case DetectorMode::Raw:
|
|
if (GetStorageCellNumber() > 1)
|
|
return GetStorageCellNumber();
|
|
else
|
|
return dataset.images_per_trigger() * GetSummation();
|
|
case DetectorMode::PedestalG0:
|
|
if (GetPedestalWithExternalTrigger())
|
|
return GetStorageCellNumber();
|
|
return internal.pedestal_g0_frames() * GetStorageCellNumber();
|
|
case DetectorMode::PedestalG1:
|
|
if (GetPedestalWithExternalTrigger())
|
|
return GetStorageCellNumber();
|
|
return internal.pedestal_g1_frames() * GetStorageCellNumber();
|
|
case DetectorMode::PedestalG2:
|
|
if (GetPedestalWithExternalTrigger())
|
|
return GetStorageCellNumber();
|
|
return internal.pedestal_g2_frames() * GetStorageCellNumber();
|
|
default:
|
|
return 0;
|
|
}
|
|
}
|
|
|
|
std::chrono::microseconds DiffractionExperiment::GetFrameCountTime() const {
|
|
return std::chrono::microseconds(internal.count_time_us());
|
|
}
|
|
|
|
std::chrono::microseconds DiffractionExperiment::GetImageCountTime() const {
|
|
return GetFrameCountTime() * GetSummation();
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetPedestalG0Frames() const {
|
|
return internal.pedestal_g0_frames();
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetPedestalG1Frames() const {
|
|
return internal.pedestal_g1_frames();
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetPedestalG2Frames() const {
|
|
return internal.pedestal_g2_frames();
|
|
}
|
|
|
|
float DiffractionExperiment::GetPhotonEnergy_keV() const {
|
|
return dataset.photon_energy_kev();
|
|
}
|
|
|
|
float DiffractionExperiment::GetWavelength_A() const {
|
|
return WVL_1A_IN_KEV / dataset.photon_energy_kev();
|
|
}
|
|
|
|
float DiffractionExperiment::GetBeamX_pxl() const {
|
|
if (GetBinning2x2())
|
|
return dataset.beam_x_pxl() / 2.0f;
|
|
else
|
|
return dataset.beam_x_pxl();
|
|
}
|
|
|
|
float DiffractionExperiment::GetBeamY_pxl() const {
|
|
if (GetBinning2x2())
|
|
return dataset.beam_y_pxl() / 2.0f;
|
|
else
|
|
return dataset.beam_y_pxl();
|
|
}
|
|
|
|
float DiffractionExperiment::GetDetectorDistance_mm() const {
|
|
return dataset.detector_distance_mm();
|
|
}
|
|
|
|
Coord DiffractionExperiment::GetScatteringVector() const {
|
|
if (dataset.has_scattering_vector())
|
|
return Coord(dataset.scattering_vector().x(), dataset.scattering_vector().y(), dataset.scattering_vector().z())
|
|
* (dataset.photon_energy_kev() / WVL_1A_IN_KEV);
|
|
else
|
|
return {0,0,dataset.photon_energy_kev() / WVL_1A_IN_KEV};
|
|
}
|
|
|
|
std::string DiffractionExperiment::GetFilePrefix() const {
|
|
return dataset.file_prefix();
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetDataFileCount() const {
|
|
return dataset.data_file_count();
|
|
}
|
|
|
|
JFJochProtoBuf::Compression DiffractionExperiment::GetCompressionAlgorithm() const {
|
|
switch (GetDetectorMode()) {
|
|
case DetectorMode::Conversion:
|
|
return dataset.compression();
|
|
default:
|
|
// Compression not supported for raw data and pedestal
|
|
return JFJochProtoBuf::NO_COMPRESSION;
|
|
}
|
|
}
|
|
|
|
CompressionAlgorithm DiffractionExperiment::GetCompressionAlgorithmEnum() const {
|
|
switch (GetCompressionAlgorithm()) {
|
|
case JFJochProtoBuf::BSHUF_LZ4:
|
|
return CompressionAlgorithm::BSHUF_LZ4;
|
|
case JFJochProtoBuf::BSHUF_ZSTD:
|
|
return CompressionAlgorithm::BSHUF_ZSTD;
|
|
case JFJochProtoBuf::BSHUF_ZSTD_RLE:
|
|
return CompressionAlgorithm::BSHUF_ZSTD_RLE;
|
|
default:
|
|
return CompressionAlgorithm::NO_COMPRESSION;
|
|
}
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetPixelDepth() const {
|
|
if (GetSummation() == 1) return 2;
|
|
else return 4;
|
|
}
|
|
|
|
bool DiffractionExperiment::IsPixelSigned() const {
|
|
return (GetDetectorMode() == DetectorMode::Conversion) && (GetDetectorType() == JFJochProtoBuf::JUNGFRAU);
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetDataStreamsNum() const {
|
|
return std::min(internal.ndatastreams(), internal.detector().nmodules());
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetModulesNum(uint16_t data_stream) const {
|
|
if (data_stream == TASK_NO_DATA_STREAM)
|
|
return internal.detector().nmodules();
|
|
|
|
if (data_stream >= GetDataStreamsNum())
|
|
throw JFJochException(JFJochExceptionCategory::ArrayOutOfBounds, "Non existing data stream");
|
|
|
|
return (internal.detector().nmodules() + (GetDataStreamsNum() - 1) - data_stream) / GetDataStreamsNum();
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetFirstModuleOfDataStream(uint16_t data_stream) const {
|
|
if (data_stream >= GetDataStreamsNum())
|
|
throw JFJochException(JFJochExceptionCategory::ArrayOutOfBounds, "Non exisiting data stream");
|
|
|
|
int64_t val = 0;
|
|
for (int i = 0; i < data_stream; i++) val += GetModulesNum(i);
|
|
return val;
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetMaxCompressedSize() const {
|
|
return MaxCompressedSize(GetCompressionAlgorithmEnum(),GetPixelsNum(), GetPixelDepth());
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetPixelsNum() const {
|
|
return GetXPixelsNum() * GetYPixelsNum();
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetPixelsNumFullImage() const {
|
|
return GetXPixelsNumFullImage() * GetYPixelsNumFullImage();
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetXPixelsNumFullImage() const {
|
|
if (GetDetectorMode() != DetectorMode::Conversion)
|
|
return RAW_MODULE_COLS;
|
|
else
|
|
return internal.detector().geometry().width_pxl();
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetXPixelsNum() const {
|
|
if (GetBinning2x2())
|
|
return GetXPixelsNumFullImage() / 2;
|
|
else
|
|
return GetXPixelsNumFullImage();
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetYPixelsNum() const {
|
|
if (GetBinning2x2())
|
|
return GetYPixelsNumFullImage() / 2;
|
|
else
|
|
return GetYPixelsNumFullImage();
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetYPixelsNumFullImage() const {
|
|
if (GetDetectorMode() != DetectorMode::Conversion)
|
|
return RAW_MODULE_LINES * GetModulesNum();
|
|
else
|
|
return internal.detector().geometry().height_pxl();
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetPixel0OfModule(uint16_t module_number) const {
|
|
if (module_number >= GetModulesNum())
|
|
throw JFJochException(JFJochExceptionCategory::ArrayOutOfBounds, "Module number out of bounds");
|
|
|
|
if (GetDetectorMode() != DetectorMode::Conversion)
|
|
return RAW_MODULE_SIZE * module_number;
|
|
else
|
|
return internal.detector().geometry().module_geometry(module_number).pixel0();
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetOverflow() const {
|
|
if (GetPixelDepth() == 2)
|
|
return INT16_MAX;
|
|
else
|
|
return INT32_MAX;
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetUnderflow() const {
|
|
if (GetPixelDepth() == 2)
|
|
return INT16_MIN;
|
|
else
|
|
return INT32_MIN;
|
|
}
|
|
|
|
std::chrono::microseconds DiffractionExperiment::GetPreviewPeriod() const {
|
|
return std::chrono::microseconds(internal.preview_period_us());
|
|
}
|
|
|
|
std::chrono::microseconds DiffractionExperiment::GetSpotFindingPeriod() const {
|
|
return std::chrono::microseconds(internal.spot_finding_period_us());
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetPreviewStride() const {
|
|
return GetPreviewStride(GetPreviewPeriod());
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetSpotFindingStride() const {
|
|
switch (GetDetectorMode()) {
|
|
case DetectorMode::Conversion:
|
|
return CalculateStride(GetImageTime(), GetSpotFindingPeriod());
|
|
default:
|
|
return 0;
|
|
}
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetSpotFindingBin() const {
|
|
if (GetImageTime().count() >= 200*1000)
|
|
return 1;
|
|
else
|
|
return 200*1000 / GetImageTime().count(); // 1 bin = 1 second
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetPreviewStride(std::chrono::microseconds period) const {
|
|
switch (GetDetectorMode()) {
|
|
case DetectorMode::Conversion:
|
|
return CalculateStride(GetImageTime(), period);
|
|
default:
|
|
return 0;
|
|
}
|
|
}
|
|
|
|
bool DiffractionExperiment::IsUsingInternalPacketGen() const {
|
|
return internal.internal_fpga_packet_generator();
|
|
}
|
|
|
|
uint32_t DiffractionExperiment::GetSrcIPv4Address(uint32_t data_stream, uint32_t half_module) const {
|
|
if (data_stream >= GetDataStreamsNum())
|
|
throw JFJochException(JFJochExceptionCategory::ArrayOutOfBounds, "Non existing data stream");
|
|
if (half_module >= 2 * GetModulesNum(data_stream))
|
|
throw JFJochException(JFJochExceptionCategory::ArrayOutOfBounds, "Non existing module");
|
|
|
|
uint32_t host = half_module + 2 * GetFirstModuleOfDataStream(data_stream);
|
|
|
|
return internal.ipv4_base_addr() + (host << 24);
|
|
}
|
|
|
|
bool DiffractionExperiment::CheckGitSha1Consistent() const {
|
|
return (internal.git_sha1() == jfjoch_git_sha1());
|
|
}
|
|
|
|
std::string DiffractionExperiment::CheckGitSha1Msg() const {
|
|
if (internal.git_sha1() == jfjoch_git_sha1())
|
|
return "";
|
|
else {
|
|
return "Local component git repo is rev. " + jfjoch_git_sha1().substr(0,6) + " (" + jfjoch_git_date() +") remote component repo is rev. "
|
|
+ internal.git_sha1().substr(0,6) + " (" + internal.git_date() + ")";
|
|
}
|
|
}
|
|
|
|
bool DiffractionExperiment::GetMaskModuleEdges() const {
|
|
return internal.mask_module_edges();
|
|
}
|
|
|
|
bool DiffractionExperiment::GetMaskChipEdges() const {
|
|
return internal.mask_chip_edges();
|
|
}
|
|
|
|
UnitCell DiffractionExperiment::GetUnitCell() const {
|
|
return {
|
|
.a = dataset.unit_cell().a(),
|
|
.b = dataset.unit_cell().b(),
|
|
.c = dataset.unit_cell().c(),
|
|
.alpha = dataset.unit_cell().alpha(),
|
|
.beta = dataset.unit_cell().beta(),
|
|
.gamma = dataset.unit_cell().gamma()
|
|
};
|
|
}
|
|
|
|
bool DiffractionExperiment::HasUnitCell() const {
|
|
return dataset.has_unit_cell();
|
|
}
|
|
|
|
Coord DiffractionExperiment::LabCoord(float detector_x, float detector_y) const {
|
|
// Assumes planar detector, 90 deg towards beam
|
|
return {(detector_x - GetBeamX_pxl()) * GetPixelSize_mm() ,
|
|
(detector_y - GetBeamY_pxl()) * GetPixelSize_mm() ,
|
|
GetDetectorDistance_mm()};
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetSpaceGroupNumber() const {
|
|
return dataset.space_group_number();
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetStorageCellNumber() const {
|
|
switch (GetDetectorMode()) {
|
|
case DetectorMode::PedestalG1:
|
|
case DetectorMode::PedestalG2:
|
|
if (internal.storage_cells() > 1)
|
|
return 2;
|
|
else
|
|
return 1;
|
|
default:
|
|
return internal.storage_cells();
|
|
}
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetStorageCellStart() const {
|
|
return internal.storage_cell_start();
|
|
}
|
|
|
|
float DiffractionExperiment::GetLowQForRadialInt_recipA() const {
|
|
return internal.low_q();
|
|
}
|
|
float DiffractionExperiment::GetHighQForRadialInt_recipA() const {
|
|
return internal.high_q();
|
|
}
|
|
|
|
float DiffractionExperiment::GetQSpacingForRadialInt_recipA() const {
|
|
return internal.q_spacing();
|
|
}
|
|
|
|
JFJochProtoBuf::DetectorType DiffractionExperiment::GetDetectorType() const {
|
|
return internal.detector().type();
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetMaxSpotCount() const {
|
|
return max_spot_count;
|
|
}
|
|
|
|
std::string DiffractionExperiment::GetSampleName() const {
|
|
return dataset.sample_name();
|
|
}
|
|
|
|
// Create ProtoBuf structures
|
|
|
|
DiffractionExperiment::operator JFJochProtoBuf::DetectorInput() const {
|
|
JFJochProtoBuf::DetectorInput ret;
|
|
|
|
ret.set_modules_num(GetModulesNum());
|
|
ret.set_mode(internal.mode());
|
|
|
|
if (GetNumTriggers() == 1) {
|
|
ret.set_num_frames(GetFrameNumPerTrigger() + DELAY_FRAMES_STOP_AND_QUIT);
|
|
ret.set_num_triggers(1);
|
|
} else {
|
|
// More than 1 trigger - detector needs one trigger or few more trigger
|
|
if (GetStorageCellNumber() > 1)
|
|
ret.set_num_frames(1);
|
|
else
|
|
ret.set_num_frames(GetFrameNumPerTrigger());
|
|
|
|
if (GetFrameNumPerTrigger() < DELAY_FRAMES_STOP_AND_QUIT)
|
|
ret.set_num_triggers(GetNumTriggers() + DELAY_FRAMES_STOP_AND_QUIT);
|
|
else
|
|
ret.set_num_triggers(GetNumTriggers() + 1);
|
|
}
|
|
ret.set_storage_cell_start(GetStorageCellStart());
|
|
ret.set_storage_cell_number(GetStorageCellNumber());
|
|
ret.set_storage_cell_delay_ns(GetStorageCellDelay().count());
|
|
|
|
if (GetStorageCellNumber() > 1) {
|
|
ret.set_period_us((GetFrameTime().count() +10) * GetStorageCellNumber());
|
|
} else
|
|
ret.set_period_us(GetFrameTime().count());
|
|
|
|
ret.set_count_time_us(GetFrameCountTime().count());
|
|
|
|
return ret;
|
|
}
|
|
|
|
JFJochProtoBuf::DetectorConfig DiffractionExperiment::DetectorConfig(const JFJochProtoBuf::ReceiverNetworkConfig &net_config) const {
|
|
JFJochProtoBuf::DetectorConfig ret;
|
|
if (net_config.device_size() < GetDataStreamsNum())
|
|
throw JFJochException(JFJochExceptionCategory::ArrayOutOfBounds,
|
|
"Number of FPGA boards in the receiver is less then necessary");
|
|
|
|
if (!internal.detector().module_hostname().empty() && (internal.detector().module_hostname_size() != GetModulesNum()))
|
|
throw JFJochException(JFJochExceptionCategory::ArrayOutOfBounds,
|
|
"Inconsistent number of modules and detector module host names");
|
|
|
|
if (!internal.detector().module_hostname().empty())
|
|
*ret.mutable_module_hostname() = internal.detector().module_hostname();
|
|
|
|
for (int d = 0; d < GetDataStreamsNum(); d++) {
|
|
for (int m = 0; m < GetModulesNum(d); m++) {
|
|
auto mod_cfg = ret.add_modules();
|
|
mod_cfg->set_udp_dest_port_1(net_config.device(d).udp_port());
|
|
mod_cfg->set_udp_dest_port_2(net_config.device(d).udp_port());
|
|
mod_cfg->set_ipv4_src_addr_1(IPv4AddressToStr(GetSrcIPv4Address(d, 2 * m)));
|
|
mod_cfg->set_ipv4_src_addr_2(IPv4AddressToStr(GetSrcIPv4Address(d, 2 * m + 1)));
|
|
mod_cfg->set_ipv4_dest_addr_1(net_config.device(d).ipv4_addr());
|
|
mod_cfg->set_ipv4_dest_addr_2(net_config.device(d).ipv4_addr());
|
|
mod_cfg->set_mac_addr_dest_1(net_config.device(d).mac_addr());
|
|
mod_cfg->set_mac_addr_dest_2(net_config.device(d).mac_addr());
|
|
mod_cfg->set_module_id_in_data_stream(m);
|
|
}
|
|
}
|
|
return ret;
|
|
}
|
|
|
|
void DiffractionExperiment::LoadDatasetSettings(const JFJochProtoBuf::DatasetSettings &settings) {
|
|
// Save DatasetSettings - if something goes wrong, restore old settings
|
|
auto tmp = dataset;
|
|
|
|
try {
|
|
dataset = JFJochProtoBuf::DatasetSettings();
|
|
ImagesPerTrigger(settings.images_per_trigger());
|
|
NumTriggers(settings.ntrigger());
|
|
if (settings.has_image_time_us())
|
|
ImageTimeUs(std::chrono::microseconds(settings.image_time_us()));
|
|
else
|
|
Summation(settings.summation());
|
|
BeamX_pxl(settings.beam_x_pxl());
|
|
BeamY_pxl(settings.beam_y_pxl());
|
|
DetectorDistance_mm(settings.detector_distance_mm());
|
|
PhotonEnergy_keV(settings.photon_energy_kev());
|
|
FilePrefix(settings.file_prefix());
|
|
DataFileCount(settings.data_file_count());
|
|
if (settings.has_unit_cell())
|
|
SetUnitCell(settings.unit_cell());
|
|
else
|
|
SetUnitCell();
|
|
SpaceGroupNumber(settings.space_group_number());
|
|
SampleName(settings.sample_name());
|
|
if (settings.has_scattering_vector())
|
|
ScatteringVector({0,0,1});
|
|
Compression(settings.compression());
|
|
Binning2x2(settings.binning2x2());
|
|
} catch (...) {
|
|
dataset = tmp;
|
|
throw;
|
|
}
|
|
}
|
|
|
|
void DiffractionExperiment::LoadDetectorSettings(const JFJochProtoBuf::DetectorSettings &settings) {
|
|
auto tmp = internal;
|
|
try {
|
|
if (settings.has_count_time_us())
|
|
FrameTime(std::chrono::microseconds(settings.frame_time_us()),
|
|
std::chrono::microseconds(settings.count_time_us()));
|
|
else
|
|
FrameTime(std::chrono::microseconds(settings.frame_time_us()));
|
|
|
|
StorageCells(settings.storage_cell_count());
|
|
UseInternalPacketGenerator(settings.use_internal_packet_generator());
|
|
|
|
if (settings.collect_raw_data())
|
|
Mode(DetectorMode::Raw);
|
|
else
|
|
Mode(DetectorMode::Conversion);
|
|
|
|
if (settings.has_pedestal_g0_frames())
|
|
PedestalG0Frames(settings.pedestal_g0_frames());
|
|
|
|
if (settings.has_pedestal_g1_frames())
|
|
PedestalG1Frames(settings.pedestal_g1_frames());
|
|
|
|
if (settings.has_pedestal_g2_frames())
|
|
PedestalG2Frames(settings.pedestal_g2_frames());
|
|
if (settings.has_storage_cell_delay_ns())
|
|
StorageCellDelay(std::chrono::nanoseconds(settings.storage_cell_delay_ns()));
|
|
ConversionOnCPU(settings.conversion_on_cpu());
|
|
} catch (...) {
|
|
internal = tmp;
|
|
throw;
|
|
}
|
|
}
|
|
|
|
JFJochProtoBuf::DetectorSettings DiffractionExperiment::GetDetectorSettings() const {
|
|
JFJochProtoBuf::DetectorSettings ret;
|
|
ret.set_frame_time_us(GetFrameTime().count());
|
|
ret.set_count_time_us(GetFrameCountTime().count());
|
|
ret.set_collect_raw_data(GetDetectorMode() != DetectorMode::Conversion);
|
|
ret.set_use_internal_packet_generator(IsUsingInternalPacketGen());
|
|
ret.set_storage_cell_count(GetStorageCellNumber());
|
|
ret.set_pedestal_g0_frames(GetPedestalG0Frames());
|
|
ret.set_pedestal_g1_frames(GetPedestalG1Frames());
|
|
ret.set_pedestal_g2_frames(GetPedestalG2Frames());
|
|
ret.set_storage_cell_delay_ns(GetStorageCellDelay().count());
|
|
return ret;
|
|
}
|
|
|
|
void DiffractionExperiment::CheckDataProcessingSettings(const JFJochProtoBuf::DataProcessingSettings &settings) {
|
|
check_min("Signal to noise threshold", settings.signal_to_noise_threshold(), 1);
|
|
check_min("Photon count threshold", settings.photon_count_threshold(), 0);
|
|
check_min("Minimum pixels per spot", settings.min_pix_per_spot(), 1);
|
|
check_min("Maximum pixels per spot", settings.max_pix_per_spot(), settings.min_pix_per_spot() + 1);
|
|
check_min("Local background size", settings.local_bkg_size(), 2);
|
|
check_max("Local background size", settings.local_bkg_size(), 7);
|
|
if (settings.has_high_resolution_limit()) {
|
|
check_min("Spot finding high resolution limit", settings.high_resolution_limit(), 0.5);
|
|
check_max("Spot finding high resolution limit", settings.high_resolution_limit(), 50.0);
|
|
if (settings.has_low_resolution_limit()) {
|
|
check_min("Spot finding low resolution limit", settings.low_resolution_limit(),
|
|
settings.high_resolution_limit());
|
|
}
|
|
} else if (settings.has_low_resolution_limit()) {
|
|
check_min("Spot finding low resolution limit", settings.low_resolution_limit(), 1.0);
|
|
check_max("Spot finding low resolution limit", settings.low_resolution_limit(), 50.0);
|
|
}
|
|
check_min("Background estimate lowQ", settings.bkg_estimate_low_q(), 0.0);
|
|
check_min("Background estimate highQ", settings.bkg_estimate_high_q(), settings.bkg_estimate_low_q());
|
|
|
|
}
|
|
|
|
JFJochProtoBuf::DataProcessingSettings DiffractionExperiment::DefaultDataProcessingSettings() {
|
|
JFJochProtoBuf::DataProcessingSettings ret;
|
|
ret.set_local_bkg_size(5);
|
|
ret.set_signal_to_noise_threshold(3);
|
|
ret.set_photon_count_threshold(16);
|
|
ret.set_min_pix_per_spot(1);
|
|
ret.set_max_pix_per_spot(50);
|
|
ret.set_bkg_estimate_low_q(2 * M_PI / 5.0);
|
|
ret.set_bkg_estimate_high_q(2 * M_PI / 3.0);
|
|
return ret;
|
|
}
|
|
|
|
DiffractionExperiment &DiffractionExperiment::ConversionOnCPU(bool input) {
|
|
internal.set_conversion_on_cpu(input);
|
|
return *this;
|
|
}
|
|
|
|
bool DiffractionExperiment::GetConversionOnCPU() const {
|
|
if (GetDetectorType() == JFJochProtoBuf::JUNGFRAU)
|
|
return internal.conversion_on_cpu();
|
|
else
|
|
return false;
|
|
}
|
|
|
|
bool DiffractionExperiment::GetConversionOnFPGA() const {
|
|
if (GetDetectorType() == JFJochProtoBuf::JUNGFRAU)
|
|
return !internal.conversion_on_cpu();
|
|
else
|
|
return false;
|
|
}
|
|
|
|
void DiffractionExperiment::FillMessage(StartMessage &message) const {
|
|
message.data_file_count = GetDataFileCount();
|
|
message.beam_center_x = GetBeamX_pxl();
|
|
message.beam_center_y = GetBeamY_pxl();
|
|
message.detector_distance = GetDetectorDistance_mm() * 1e-3f;
|
|
message.incident_wavelength = GetWavelength_A();
|
|
message.incident_energy = GetPhotonEnergy_keV() * 1e3f;
|
|
message.image_size_x = GetXPixelsNum();
|
|
message.image_size_y = GetYPixelsNum();
|
|
message.min_value = GetUnderflow();
|
|
message.saturation_value = GetOverflow();
|
|
message.frame_time = GetImageTime().count() * 1e-6f;
|
|
message.count_time = GetImageCountTime().count() * 1e-6f;
|
|
message.number_of_images = GetImageNum();
|
|
message.pixel_size_x = GetPixelSize_mm() * 1e-3f;
|
|
message.pixel_size_y = GetPixelSize_mm() * 1e-3f;
|
|
message.sensor_material = SENSOR_MATERIAL;
|
|
message.sensor_thickness = SENSOR_THICKNESS_IN_UM * 1e-6f;
|
|
message.compression_algorithm = GetCompressionAlgorithmEnum();
|
|
message.compression_block_size = JFJochBitShuffleCompressor::DefaultBlockSize;
|
|
message.pixel_bit_depth = GetPixelDepth() * 8;
|
|
message.storage_cell_number = GetStorageCellNumber();
|
|
message.storage_cell_delay_ns = GetStorageCellDelay().count();
|
|
message.file_prefix = GetFilePrefix();
|
|
message.pixel_signed = IsPixelSigned();
|
|
message.sample_name = GetSampleName();
|
|
message.max_spot_count = GetMaxSpotCount();
|
|
message.pixel_mask_enabled = GetApplyPixelMaskInFPGA();
|
|
message.detector_description = GetDetectorDescription();
|
|
message.space_group_number = GetSpaceGroupNumber();
|
|
if (HasUnitCell()) {
|
|
auto uc = GetUnitCell();
|
|
message.unit_cell[0] = uc.a;
|
|
message.unit_cell[1] = uc.b;
|
|
message.unit_cell[2] = uc.c;
|
|
message.unit_cell[3] = uc.alpha;
|
|
message.unit_cell[4] = uc.beta;
|
|
message.unit_cell[5] = uc.gamma;
|
|
} else {
|
|
message.unit_cell[0] = 0.0;
|
|
}
|
|
|
|
message.detector_translation[0] = 0.0f;
|
|
message.detector_translation[1] = 0.0f;
|
|
message.detector_translation[2] = GetDetectorDistance_mm() * 1e-3f;
|
|
|
|
message.source_name = GetSourceName();
|
|
message.source_name_short = GetSourceNameShort();
|
|
|
|
message.instrument_name = GetInstrumentName();
|
|
message.instrument_name_short = GetInstrumentNameShort();
|
|
message.summation = GetSummation();
|
|
}
|
|
|
|
DiffractionExperiment &DiffractionExperiment::ApplyPixelMaskInFPGA(bool input) {
|
|
internal.set_debug_pixel_mask(!input);
|
|
return *this;
|
|
}
|
|
|
|
bool DiffractionExperiment::GetApplyPixelMaskInFPGA() const {
|
|
if (GetDetectorMode() == DetectorMode::Conversion)
|
|
return !internal.debug_pixel_mask();
|
|
else
|
|
return false;
|
|
}
|
|
|
|
float DiffractionExperiment::GetPixelSize_mm() const {
|
|
if (GetBinning2x2())
|
|
return internal.detector().pixel_size_mm() * 2;
|
|
else
|
|
return internal.detector().pixel_size_mm();
|
|
}
|
|
|
|
DiffractionExperiment &DiffractionExperiment::Binning2x2(bool input) {
|
|
dataset.set_binning2x2(input);
|
|
return *this;
|
|
}
|
|
|
|
bool DiffractionExperiment::GetBinning2x2() const {
|
|
if (GetDetectorMode() == DetectorMode::Conversion)
|
|
return dataset.binning2x2();
|
|
else
|
|
return false;
|
|
}
|
|
|
|
DiffractionExperiment &DiffractionExperiment::SourceName(std::string input) {
|
|
internal.set_source_name(input);
|
|
return *this;
|
|
}
|
|
|
|
DiffractionExperiment &DiffractionExperiment::SourceNameShort(std::string input) {
|
|
internal.set_source_name_short(input);
|
|
return *this;
|
|
}
|
|
|
|
DiffractionExperiment &DiffractionExperiment::InstrumentName(std::string input) {
|
|
internal.set_instrument_name(input);
|
|
return *this;
|
|
}
|
|
|
|
DiffractionExperiment &DiffractionExperiment::InstrumentNameShort(std::string input) {
|
|
internal.set_instrument_name_short(input);
|
|
return *this;
|
|
}
|
|
|
|
std::string DiffractionExperiment::GetSourceName() const {
|
|
return internal.source_name();
|
|
}
|
|
|
|
std::string DiffractionExperiment::GetSourceNameShort() const {
|
|
return internal.source_name_short();
|
|
}
|
|
|
|
std::string DiffractionExperiment::GetInstrumentName() const {
|
|
return internal.instrument_name();
|
|
}
|
|
|
|
std::string DiffractionExperiment::GetInstrumentNameShort() const {
|
|
return internal.instrument_name_short();
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetModuleFastDirectionStep(uint16_t module_number) const {
|
|
if (module_number >= GetModulesNum())
|
|
throw JFJochException(JFJochExceptionCategory::ArrayOutOfBounds, "Module number out of bounds");
|
|
|
|
return internal.detector().geometry().module_geometry(module_number).fast_direction_step();
|
|
}
|
|
|
|
int64_t DiffractionExperiment::GetModuleSlowDirectionStep(uint16_t module_number) const {
|
|
if (module_number >= GetModulesNum())
|
|
throw JFJochException(JFJochExceptionCategory::ArrayOutOfBounds, "Module number out of bounds");
|
|
|
|
return internal.detector().geometry().module_geometry(module_number).slow_direction_step();
|
|
}
|
|
|
|
void DiffractionExperiment::GetDetectorModuleHostname(std::vector<std::string> &output) const {
|
|
for (const auto &iter: internal.detector().module_hostname())
|
|
output.push_back(iter);
|
|
}
|
|
|
|
std::string DiffractionExperiment::GetDetectorDescription() const {
|
|
return internal.detector().description();
|
|
}
|
|
|
|
bool DiffractionExperiment::GetPedestalWithExternalTrigger() const {
|
|
return (GetStorageCellNumber() > 1);
|
|
}
|
|
|
|
DiffractionExperiment &DiffractionExperiment::ApplySolidAngleCorr(bool input) {
|
|
dataset.set_rad_int_solid_angle_corr(input);
|
|
return *this;
|
|
}
|
|
|
|
DiffractionExperiment &DiffractionExperiment::ApplyPolarizationCorr(bool input) {
|
|
dataset.set_rad_int_polarization_corr(input);
|
|
return *this;
|
|
}
|
|
|
|
DiffractionExperiment &DiffractionExperiment::PolarizationFactor(float input) {
|
|
dataset.set_rad_int_polarization_factor(input);
|
|
return *this;
|
|
}
|
|
|
|
bool DiffractionExperiment::GetApplySolidAngleCorr() const {
|
|
return dataset.rad_int_solid_angle_corr();
|
|
}
|
|
|
|
bool DiffractionExperiment::GetApplyPolarizationCorr() const {
|
|
return dataset.rad_int_polarization_corr();
|
|
}
|
|
|
|
float DiffractionExperiment::GetPolarizationFactor() const {
|
|
return dataset.rad_int_polarization_factor();
|
|
}
|
|
|
|
DiffractionExperiment &DiffractionExperiment::ApplyROI(bool input) {
|
|
internal.set_roi_apply(input);
|
|
return *this;
|
|
}
|
|
|
|
DiffractionExperiment &DiffractionExperiment::AddROIRectangle(int32_t x, int32_t y, int32_t width, int32_t height) {
|
|
auto *tmp = internal.add_roi_rectangle();
|
|
tmp->set_x0(x);
|
|
tmp->set_y0(y);
|
|
tmp->set_width(width);
|
|
tmp->set_height(height);
|
|
return *this;
|
|
}
|
|
|
|
DiffractionExperiment &DiffractionExperiment::ClearROI() {
|
|
internal.clear_roi_rectangle();
|
|
return *this;
|
|
}
|
|
|
|
bool DiffractionExperiment::GetApplyROI() const {
|
|
return internal.roi_apply();
|
|
}
|
|
|
|
void DiffractionExperiment::SetupROIFilter(ROIFilter &filter) {
|
|
for (const auto& i: internal.roi_rectangle())
|
|
filter.SetRectangle(i.x0(), i.y0(), i.width(), i.height());
|
|
}
|
|
|
|
DiffractionExperiment &DiffractionExperiment::SaveCalibration(bool input) {
|
|
dataset.set_save_calibration(input);
|
|
return *this;
|
|
}
|
|
|
|
bool DiffractionExperiment::GetSaveCalibration() const {
|
|
return dataset.save_calibration();
|
|
}
|
|
|
|
DiffractionExperiment &DiffractionExperiment::StorageCellDelay(std::chrono::nanoseconds input) {
|
|
check_min("Storage cell delay [ns]", input.count(), MIN_STORAGE_CELL_DELAY_IN_NS);
|
|
internal.set_storage_cell_delay_ns(input.count());
|
|
return *this;
|
|
}
|
|
|
|
std::chrono::nanoseconds DiffractionExperiment::GetStorageCellDelay() const {
|
|
return std::chrono::nanoseconds(internal.storage_cell_delay_ns());
|
|
}
|
|
|