leonarski_fandClaude Opus 4.8
135765e5b5
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Two stills usability fixes. 1. --refine-geometry now defaults ON for stills whenever a reference cell is available (-C or a reference MTZ) - exactly the case where the geometry bundle-adjust can act (it anchors on a known cell) and where it lifts weak/ sparse-stills indexing (OCP +42%, KR2 +108% indexed in the target study). It stays a no-op for rotation (own two-pass) and de-novo stills (no cell yet), so auto-enabling it only where it does something avoids spurious "skipping" warnings. --refine-geometry=off opts out; explicit --refine-geometry[=N] forces it. 2. The reference-MTZ auto column selection now falls back to a plain amplitude column (FP / FOBS / F / FC, squared to an intensity) after F-model and the intensity (J) columns. A deposition that carries only structure-factor amplitudes (e.g. KR2's 8cl8, whose only usable column is FP) now seeds CCref without needing an explicit --reference-column FP. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>