leonarski_f 351be7de0f Merge branch 'integ-crowded-6jgj' into rc173 (integration: a ring starved only by neighbours is taken whole) ...

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01D1G8gJVAy6gp1K5Dz3NE5C

# Conflicts:
#	image_analysis/bragg_integration/BraggIntegrationEngineCPU.cpp

2026-09-28 04:57:10 +02:00

..

azint

v1.0.0-rc.170 (#80)

2026-09-16 18:17:46 +02:00

beam_stop

ShadowFinder: the arm search's dim plane as a zero-filled Plane, for the merged helpers

2026-09-27 11:48:23 +02:00

bragg_integration

Merge branch 'integ-crowded-6jgj' into rc173 (integration: a ring starved only by neighbours is taken whole)

2026-09-28 04:57:10 +02:00

bragg_prediction

BraggPredictionRot: reject far-off-frame solutions before the atan2

2026-09-28 02:19:51 +02:00

dark_mask_analysis

v1.0.0-rc.148 (#58)

2026-06-08 08:30:35 +02:00

geom_refinement

Post-refine: run the held-distance fit beside the free one, step the six rotation-scale fits together

2026-09-27 21:22:37 +02:00

image_preprocessing

Merge rc173 (fused CPU pixel pipeline) into cpu-loops-tail

2026-09-28 02:43:16 +02:00

indexing

BraggIntegrationEngineGPU, FFTIndexerGPU: upload on the engine's stream, not the NULL stream

2026-09-27 17:11:38 +02:00

lattice_search

Rugnux: test angle promotions of the metric symmetry; score model frames at the data's best indexing

2026-09-26 13:43:58 +02:00

roi

v1.0.0-rc.170 (#80)

2026-09-16 18:17:46 +02:00

rotation_indexer

RotationIndexer: the fixed-point chain's Ceres solves on 16 threads

2026-09-27 07:29:27 +02:00

scale_merge

RotationScaleMerge: the CPU partial scaling loop works on a compact copy of the partials

2026-09-28 02:19:51 +02:00

spot_finding

CPU pixel loops: keep the ring sums and the vertical slide out of memory for real

2026-09-28 03:57:10 +02:00

CMakeLists.txt

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

IndexAndRefine.cpp

Report the strongest index-2 superstructure class and the cell it doubles to

2026-09-25 08:57:28 +02:00

IndexAndRefine.h

Report the strongest index-2 superstructure class and the cell it doubles to

2026-09-25 08:57:28 +02:00

IntegrationOutcome.h

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

LoadFCalcFromMtz.cpp

rugnux: accept a PDB structure-factor mmCIF as the -z reference

2026-09-25 20:17:03 +02:00

LoadFCalcFromMtz.h

rugnux: accept a PDB structure-factor mmCIF as the -z reference

2026-09-25 20:17:03 +02:00

MXAnalysisAfterFPGA.cpp

v1.0.0-rc.156 (#66)

2026-07-03 19:18:56 +02:00

MXAnalysisAfterFPGA.h

v1.0.0-rc.156 (#66)

2026-07-03 19:18:56 +02:00

MXAnalysisWithoutFPGA.cpp

CPU pixel pipeline: decode, preprocess and ring pass per bitshuffle block; flag rings in the local sweep

2026-09-28 02:00:50 +02:00

MXAnalysisWithoutFPGA.h

CPU pixel pipeline: decode, preprocess and ring pass per bitshuffle block; flag rings in the local sweep

2026-09-28 02:00:50 +02:00

ReflectionArena.h

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

SensorAbsorption.h

rugnux: measure the X-ray bandwidth from the pre-scan's spot shapes (reported only)

2026-09-23 20:42:46 +02:00

UpdateReflectionResolution.cpp

v1.0.0-rc.167 (#77)

2026-09-09 07:25:13 +02:00

UpdateReflectionResolution.h

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

WriteReflections.cpp

Rugnux: build the unmerged MTZ beside the P1 cross-check merge

2026-09-26 22:45:48 +02:00

WriteReflections.h

Rugnux: keep the experiment the unmerged MTZ is built from until the file is written

2026-09-27 03:54:29 +02:00