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leonarski_fandClaude Opus 5 2d3c39c9dd image_preprocessing: write whole elements out of the un-transpose 
The raw-bytes path assembled each element a byte at a time, which on a full frame cost
about 4x against writing the 8 contiguous elements a thread owns through an
element-typed pointer. They are 8*ES-byte aligned, so the compiler merges them.
72.4 MB frame: 1.524 -> 0.406 ms for upload plus both kernels.

The test now also times the LZ4 pass on its own, so the bounds and validity checks in
the hot loop can be costed rather than guessed at. They are free: 0.231 ms against
0.2297 ms measured for the kernel before any of them existed - the restored offset == 1
and power-of-two fast paths pay for them. compute-sanitizer memcheck reports no error
over 400 single-bit-corrupted payloads and nine malformed containers.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
2026-08-03 14:16:58 +02:00
..
crystfel
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
data
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
test_data
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
xds
v1.0.0-rc.134 (#43)
2026-04-09 13:30:47 +02:00
xds_durin
version 1.0.0-rc.13
2024-10-05 13:14:49 +02:00
xds_neggia
version 1.0.0-rc.13
2024-10-05 13:14:49 +02:00
AcquisitionCountersTest.cpp
v1.0.0-rc.36
2025-05-05 19:32:22 +02:00
AdaptiveSpotFinderCPUTest.cpp
spot_finding: find connected components on the GPU
2026-08-02 13:34:43 +02:00
AdaptiveSpotFinderGPUTest.cpp
docs: record the stored-format break, and say how the adaptive finders actually accumulate
2026-08-03 14:14:24 +02:00
AdaptiveThresholdTest.cpp
Address code-review findings; make detection limits detector-driven
2026-07-27 09:07:00 +02:00
AutoIncrVectorTest.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
AzimuthalIntegrationTest.cpp
Azimuthal integration: report the dimensions of the image the mapping covers
2026-07-29 09:31:58 +02:00
BraggIntegrationEngineCompressedImageTest.cpp
v1.0.0-rc.156 (#66)
2026-07-03 19:18:56 +02:00
BraggIntegrationEngineGPUTest.cpp
v1.0.0-rc.156 (#66)
2026-07-03 19:18:56 +02:00
BSLZ4DecoderGPUFuzzTest.cpp
image_preprocessing: write whole elements out of the un-transpose
2026-08-03 14:16:58 +02:00
BSLZ4DecoderGPUTest.cpp
image_preprocessing: decode bitshuffle+LZ4 on the GPU
2026-08-03 00:16:36 +02:00
CalcBraggPredictionTest.cpp
Bragg prediction: one limit per index, not one cube
2026-07-31 13:31:34 +02:00
CBORTest.cpp
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
CCTest.cpp
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
CheckImageOutput.h
v1.0.0-rc.36
2025-05-05 19:32:22 +02:00
CMakeLists.txt
image_preprocessing: fuse the bitshuffle inverse with preprocessing, and verify the decode
2026-08-03 14:13:55 +02:00
CoordTest.cpp
v1.0.0-rc.41
2025-06-10 18:14:04 +02:00
CrystalLatticeTest.cpp
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorGeometryTest.cpp
v1.0.0-rc.103 (#8)
2025-11-19 09:40:50 +01:00
DetectorSettingsTest.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
DetectorSetupTest.cpp
v1.0.0-rc.143 (#53)
2026-04-30 22:16:50 +02:00
DetGeomCalibTest.cpp
v1.0.0-rc.96 (#1)
2025-11-02 13:45:57 +01:00
DiffractionExperimentTest.cpp
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
DiffractionGeometryTest.cpp
v1.0.0-rc.158 (#68)
2026-07-12 19:42:29 +02:00
DiffractionSpotTest.cpp
tests: hold the integer coordinate conversion to the module map
2026-08-02 19:14:32 +02:00
enospc_shim.c
SHIM library improvements from the HDF Group
2026-05-08 11:39:51 +02:00
FPGAFrameGeneratorTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
FPGAHLSModulesTest.cpp
v1.0.0-rc.91
2025-10-20 20:43:44 +02:00
FPGAHostWriterTest.cpp
v1.0.0-rc.34
2025-04-14 11:52:06 +02:00
FPGAIntegrationTest.cpp
v1.0.0-rc.97
2025-11-09 12:42:27 +01:00
FPGANetworkTest.cpp
v1.0.0-rc.72
2025-09-08 20:28:59 +02:00
FPGAPTPTest.cpp
v1.0.0-rc.72
2025-09-08 20:28:59 +02:00
FPGASpotFindingUnitTest.cpp
v.1.0.0-rc.32
2025-03-24 12:16:33 +01:00
FrameTransformationTest.cpp
v1.0.0-rc.156 (#66)
2026-07-03 19:18:56 +02:00
FrenchWilsonTest.cpp
v1.0.0-rc.159 (#69)
2026-07-13 13:54:03 +02:00
GoniometerAxisTest.cpp
v1.0.0-rc49
2025-06-18 15:19:18 +02:00
GridScanSettingsTest.cpp
v1.0.0-rc.104 (#9)
2025-11-19 17:28:10 +01:00
HDF5WritingTest.cpp
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
HistogramTest.cpp
v1.0.0-rc.121 (#28)
2025-12-12 21:24:20 +01:00
HKLKeyTest.cpp
v1.0.0-rc.124 (#31)
2026-02-01 13:29:33 +01:00
ImageBufferTest.cpp
v1.0.0-rc.128 (#35)
2026-03-03 22:24:44 +01:00
ImageMetadataTest.cpp
v1.0.0-rc.103 (#8)
2025-11-19 09:40:50 +01:00
ImagePreprocessorGPUFusedTest.cpp
image_preprocessing: fuse the bitshuffle inverse with preprocessing, and verify the decode
2026-08-03 14:13:55 +02:00
ImageSpotFinderCPUTest.cpp
spot_finding: find connected components on the GPU
2026-08-02 13:34:43 +02:00
ImageSpotFinderGPUTest.cpp
spot_finding: fix the GPU finder's main loop, which the tests could not reach
2026-08-02 23:31:44 +02:00
IndexingUnitTest.cpp
Bragg prediction: one limit per index, not one cube
2026-07-31 13:31:34 +02:00
JFCalibrationTest.cpp
v1.0.0-rc.36
2025-05-05 19:32:22 +02:00
JFConversionTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
jfjoch_hdf5_enospc_test.cpp
SHIM library improvements from the HDF Group
2026-05-08 11:39:51 +02:00
JFJochReaderTest.cpp
tests: lock the whole reflection round trip, not six fields of it
2026-08-02 19:52:46 +02:00
JFJochReceiverIntegrationTest.cpp
v1.0.0-rc.150 (#60)
2026-06-15 20:24:15 +02:00
JFJochReceiverLiteTest.cpp
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
JFJochReceiverPlotsTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
JFJochReceiverProcessingTest.cpp
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
JFJochStateMachineTest.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
JFPedestalTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
JPEGTest.cpp
v1.0.0-rc.40
2025-05-28 18:49:27 +02:00
LatticeReductionTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
LatticeSearchTest.cpp
v1.0.0-rc.91
2025-10-20 20:43:44 +02:00
LoadReferenceMtzFreeFlagsTest.cpp
v1.0.0-rc.159 (#69)
2026-07-13 13:54:03 +02:00
LossyFilterTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
MergeScaleTest.cpp
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
ModuleSummationTest.cpp
version 1.0.0-rc.27 minor fixes
2024-12-04 20:58:51 +01:00
MovingAverageTest.cpp
v1.0.0-rc.31
2025-03-02 13:15:28 +01:00
MultiLatticeSearchTest.cpp
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
PedestalCalcTest.cpp
v1.0.0-rc.97
2025-11-09 12:42:27 +01:00
PixelMaskTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
PreviewCounterTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
RawToConvertedGeometryTest.cpp
v1.0.0-rc.97
2025-11-09 12:42:27 +01:00
RegressionTest.cpp
1.0.0-rc.89
2025-10-01 22:54:40 +02:00
ReindexAmbiguityTest.cpp
v1.0.0-rc.159 (#69)
2026-07-13 13:54:03 +02:00
ResolutionShellsTest.cpp
v1.0.0-rc.91
2025-10-20 20:43:44 +02:00
RfreeFlagsTest.cpp
v1.0.0-rc.159 (#69)
2026-07-13 13:54:03 +02:00
ROIIntegrationCPUTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIIntegrationGPUTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIMapTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
RotationIndexerTest.cpp
v1.0.0-rc.147 (#57)
2026-06-02 11:49:24 +02:00
RugnuxLargeTest.cpp
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
RugnuxTest.cpp
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
SearchSpaceGroupTest.cpp
Space-group search: judge a screw axis against its own axial row
2026-07-29 08:27:34 +02:00
SearchSpaceGroupTwinTest.cpp
Space-group search: take the operator disagreement as a median, not a mean
2026-07-28 11:07:06 +02:00
SpotExtractorGPUParityTest.cpp
spot_finding: accumulate spot centroids in integers
2026-08-02 19:03:35 +02:00
SpotUtilsTest.cpp
v1.0.0-rc.91
2025-10-20 20:43:44 +02:00
StatusVectorTest.cpp
v1.0.0-rc.127 (#34)
2026-03-02 15:57:12 +01:00
StreamWriterTest.cpp
v1.0.0-rc.97
2025-11-09 12:42:27 +01:00
StrongPixelSetTest.cpp
v1.0.0-rc.97
2025-11-09 12:42:27 +01:00
SyntheticMergedReflections.h
Space-group search: judge a promotion against its parent, not against the error model
2026-07-27 21:05:16 +02:00
TCPImagePusherTest.cpp
v1.0.0-rc.157 (#67)
2026-07-11 07:19:11 +02:00
TestData.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ThreadSafeFIFOSetTest.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
TIFFTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
TimeTest.cpp
v1.0.0-rc.96 (#1)
2025-11-02 13:45:57 +01:00
TopPixelsTest.cpp
v1.0.0-rc.121 (#28)
2025-12-12 21:24:20 +01:00
UnitCellTest.cpp
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
XDSPluginTest.cpp
Address code-review findings; make detection limits detector-driven
2026-07-27 09:07:00 +02:00
XtalOptimizerTest.cpp
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
ZMQImagePusherTest.cpp
v1.0.0-rc.129 (#36)
2026-03-05 22:13:12 +01:00
ZMQMetadataSocketTest.cpp
v1.0.0-rc.133
2026-03-26 20:50:33 +01:00
ZMQPreviewSocketTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
ZSTDCompressorTest.cpp
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00