leonarski_f
75e401f0e5
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This is an UNSTABLE release. It includes many experimental features, as well as many AI generated fixes. We recommend using rc.152 for production use. * jfjoch_broker: Add EXPERIMENTAL pixelrefine mode for image processing * jfjoch_broker: Allow to load user mask from 8-bit and 16-bit TIFF files * jfjoch_broker: Add ROI calculation in non-FPGA workflow * jfjoch_broker: Fixes to TCP image pusher * jfjoch_broker: Remove NUMA bindings * jfjoch_broker: Improvements to indexing * jfjoch_broker: For PSI EIGER, trimming energies are taken from the detector configuration (now compulsory) instead of hardcoded values * jfjoch_writer: Save ROI definitions and the per-pixel ROI bitmap in the master file; azimuthal ROIs support phi (angular) sectors * jfjoch_viewer: Major redesign with dockable panels and saved layouts, plus on-canvas creation/move/resize of box, circle and azimuthal ROIs * jfjoch_viewer: Run jfjoch_process reprocessing jobs from inside the GUI and overlay per-run results Reviewed-on: #63
71 lines
2.8 KiB
C++
71 lines
2.8 KiB
C++
// SPDX-FileCopyrightText: 2024 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
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// SPDX-License-Identifier: GPL-3.0-only
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#pragma once
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#include <map>
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#include <memory>
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#include <optional>
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#include <string>
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#include <vector>
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#include "JFJochReader.h"
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#include "JFJochReaderSpots.h"
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#include "HDF5ImageSource.h"
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#include "HDF5MetadataSource.h"
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#include "../writer/HDF5Objects.h"
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#include "../image_analysis/IntegrationOutcome.h"
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// Composes one shared raw-image source with one or more metadata sources ("snapshots") over the
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// same images: the original _master.h5 plus optional reprocessing _process.h5 results. The active
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// snapshot supplies the dataset and per-image metadata; the image source always supplies pixels,
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// so switching snapshots never reloads image data.
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class JFJochHDF5Reader : public JFJochReader {
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HDF5ImageSource image_source_;
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std::map<std::string, std::shared_ptr<HDF5MetadataSource> > snapshots_;
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std::shared_ptr<HDF5MetadataSource> active_metadata_;
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std::string active_snapshot_;
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size_t number_of_images = 0;
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bool LoadImage_i(std::shared_ptr<JFJochReaderDataset> &dataset,
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DataMessage &message,
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std::vector<uint8_t> &buffer,
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int64_t image_number,
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bool update_dataset) override;
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HDF5ImageLocator::Location GetImageLocation(int64_t image_number) const;
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public:
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~JFJochHDF5Reader() override = default;
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void ReadFile(const std::string &filename);
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uint64_t GetNumberOfImages() const override;
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void Close() override;
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std::vector<HDF5DataSourceMessage> GetHDF5DataSource(
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uint64_t first_image = 0,
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std::optional<uint64_t> image_count = {}
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) const;
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std::vector<IntegrationOutcome> ReadReflections(size_t start_image = 0, std::optional<size_t> end_image = {}) const;
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std::vector<SpotToSave> ReadSpots(int64_t image) const override;
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CompressedImage ReadCalibration(std::vector<uint8_t> &tmp, const std::string &name) const;
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std::shared_ptr<JFJochReaderRawImage> GetRawImage(int64_t image_number) override;
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// Metadata snapshots over the same images. The original file is registered as "Original" on
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// ReadFile and is the initial active snapshot; reprocessing results can be added later.
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void RegisterSnapshot(const std::string &name, const std::string &master_path);
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void RemoveSnapshot(const std::string &name); // "Original" cannot be removed
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void SetActiveSnapshot(const std::string &name);
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std::vector<std::string> SnapshotNames() const;
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std::string ActiveSnapshot() const;
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// All snapshot datasets (name -> dataset), for overlaying every run's plots at once.
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std::vector<std::pair<std::string, std::shared_ptr<const JFJochReaderDataset>>> AllSnapshotDatasets() const;
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};
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