leonarski_f
680c36c20d
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* `rugnux --mode calibration` writes `<prefix>.json` beside the `.poni`, whose `dataset_settings` member is a `jfjoch_broker` `dataset_settings` body as it stands. * `rugnux` and `jfjoch_viewer` read PILATUS miniCBF sweeps natively, without conversion. * Masters written by other facilities open, including Eiger 1.x and third-party NXmx variants. * `rugnux` measures the beam centre on every run, and indexes with it when the file's value indexes nothing. * A detector swung out on a 2theta arm is placed where the file says it stands, and the calibration can hold the tilt fixed. * `rugnux` writes the unmerged MTZ by default, and a P1 merge beside it, so a wrong space group can be re-merged without reprocessing. * Significant improvements to symmetry handling in `rugnux`: the lattice, the point group, the setting and the systematic absences. * The `rugnux` report gives the resolution the CC1/2 fit reached, beside the range the reflections were written to. * The `rugnux` report gives the twinning statistics measured before the space group was decided, beside the ones measured after. * The `rugnux` report gives the strong-direction diffraction limit, and warns when CC1/2 is not monotone with resolution. * `rugnux` ranks screw axes on the evidence their absences carry, rather than on how many control reflections a candidate happens to have. * Twinning is no longer reported when the L-test contradicts it. * The `rugnux` report gives the detector tilt, the measured tilt and the direct beam beside the beam centre, and a post-refined beam centre is judged against the run's own measurement rather than the file's. * `--no-refine-tilt` holds the detector tilt at the value in the file, instead of zeroing it, when the calibration starts from the spots. * The `jfjoch_viewer` grid scan view draws the cells in the proportion of the scan steps, so the map has the shape of the scanned area. Reviewed-on: #76 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
105 lines
2.8 KiB
JSON
105 lines
2.8 KiB
JSON
{
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"instrument" : {
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"source_name": "Swiss Light Source",
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"instrument_name": "X06SA VESPA",
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"source_type": "Synchrotron X-ray Source"
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},
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"dark_mask" : {
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"detector_threshold_keV":4.0,
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"frame_time_us":20000,
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"max_allowed_pixel_count":3,
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"max_frames_with_signal":20,
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"number_of_frames":500
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},
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"spot_finding": {
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"enable":true,
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"high_res_gap_Q_recipA":1.5,
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"high_resolution_limit":2.0,
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"high_resolution_limit_for_spot_count_low_res":5.0,
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"ice_ring_width_q_recipA":0.02,
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"signal_to_noise_threshold":4.0,
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"photon_count_threshold":10,
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"low_resolution_limit":50.0,
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"max_pix_per_spot":200,
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"min_pix_per_spot":2,
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"indexing":true,
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"quick_integration":true
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},
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"detector": [
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{
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"description": "JUNGFRAU 4M",
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"serial_number": "JF1",
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"type": "JUNGFRAU",
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"udp_interface_count": 2,
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"mirror_y": true,
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"standard_geometry" : {
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"nmodules": 8,
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"modules_in_row": 2,
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"gap_x": 8,
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"gap_y": 36
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}
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},
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{
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"description": "JUNGFRAU 9M",
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"serial_number": "JF2",
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"type": "JUNGFRAU",
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"mirror_y": true,
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"udp_interface_count": 1,
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"standard_geometry" : {
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"nmodules": 18,
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"modules_in_row": 3,
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"gap_x": 8,
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"gap_y": 36
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}
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},
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{
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"description": "EIGER 9M",
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"serial_number": "E1",
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"type": "EIGER",
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"mirror_y": true,
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"standard_geometry" : {
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"nmodules": 18,
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"modules_in_row": 3,
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"gap_x": 8,
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"gap_y": 36
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}
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},
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{
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"description": "JUNGFRAU 2.5M",
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"serial_number": "JF1",
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"type": "JUNGFRAU",
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"udp_interface_count": 2,
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"mirror_y": true,
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"custom_geometry": [
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{"x0": 292, "y0": 0, "fast_axis":"Xp", "slow_axis":"Yp"},
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{"x0": 513, "y0": 535, "fast_axis":"Yp", "slow_axis":"Xn"},
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{"x0": 1062, "y0": 535, "fast_axis":"Yp", "slow_axis":"Xn"},
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{"x0": 1611, "y0": 535, "fast_axis":"Yp", "slow_axis":"Xn"},
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{"x0": 292, "y0": 1587, "fast_axis":"Xp", "slow_axis":"Yp"}
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]
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}
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],
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"zeromq_preview": {
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"socket_address": "tcp://0.0.0.0:5501",
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"enabled": true,
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"period_ms": 1000
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},
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"detector_settings": {
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"frame_time_us": 1000,
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"jungfrau_pedestal_g0_frames": 0,
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"jungfrau_pedestal_g1_frames": 0,
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"jungfrau_pedestal_g2_frames": 0,
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"jungfrau_pedestal_g0_rms_limit": 100,
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"jungfrau_pedestal_min_image_count": 128,
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"jungfrau_storage_cell_count": 1,
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"jungfrau_storage_cell_delay_ns": 2100,
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"jungfrau_fixed_gain_g1": false,
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"jungfrau_use_gain_hg0": false,
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"internal_frame_generator": true,
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"internal_frame_generator_images": 1,
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"detector_trigger_delay_ns": 0
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},
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"frontend_directory": "../../frontend/dist/",
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"image_pusher": "HDF5"
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}
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