The 'Save _process.h5' checkbox drove output_prefix, so unchecking it also
suppressed the merged .mtz/.cif, and there was no way to run for the ISa/R-meas
numbers only. Split it into two checkboxes wired to independent flags:
- Save _process.h5 -> ProcessConfig::write_process_h5 (also drives the viewer
snapshot, so unchecking it means the viewer is not updated with spots/results)
- Write merged .mtz/.cif -> new ProcessConfig::write_merged
output_prefix is set when either is wanted; both off = process for stats only.
Scaling/merge statistics (hence the ISa/R-meas window) are independent of file
writing, so they show in every case. RugnuxCommandLine now emits
--write-process-h5 so a copied command matches the GUI's choice.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
leonarski_fandClaude Opus 4.8
9b1ab02c41