leonarski_f
21a8ea51ee
Build Packages / build:rpm (ubuntu2404_nocuda) (push) Failing after 8m56s
Build Packages / build:rpm (rocky8_nocuda) (push) Failing after 10m5s
Build Packages / build:rpm (rocky9_nocuda) (push) Failing after 11m41s
Build Packages / build:rpm (ubuntu2204_nocuda) (push) Failing after 11m39s
Build Packages / build:rpm (rocky9_sls9) (push) Failing after 11m42s
Build Packages / build:rpm (rocky8_sls9) (push) Failing after 11m45s
Build Packages / build:rpm (rocky8) (push) Failing after 11m47s
Build Packages / build:rpm (rocky9) (push) Failing after 10m21s
Build Packages / Generate python client (push) Successful in 14s
Build Packages / build:rpm (ubuntu2204) (push) Failing after 9m58s
Build Packages / Create release (push) Skipped
Build Packages / XDS test (neggia plugin) (push) Successful in 8m14s
Build Packages / Build documentation (push) Successful in 36s
Build Packages / XDS test (durin plugin) (push) Successful in 8m52s
Build Packages / build:rpm (ubuntu2404) (push) Failing after 9m4s
Build Packages / XDS test (JFJoch plugin) (push) Successful in 9m7s
Build Packages / DIALS test (push) Successful in 11m49s
Build Packages / Unit tests (push) Successful in 1h8m58s
67 lines
2.1 KiB
C++
67 lines
2.1 KiB
C++
// SPDX-FileCopyrightText: 2024 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
|
|
// SPDX-License-Identifier: GPL-3.0-only
|
|
|
|
#pragma once
|
|
|
|
#include "HDF5DataFilePlugin.h"
|
|
#include "../common/AutoIncrVector.h"
|
|
|
|
class HDF5DataFilePluginMX : public HDF5DataFilePlugin {
|
|
const size_t max_spots;
|
|
const bool indexing;
|
|
// spots
|
|
std::vector<float> spot_x;
|
|
std::vector<float> spot_y;
|
|
std::vector<float> spot_int;
|
|
std::vector<int8_t> spot_indexed;
|
|
std::vector<int8_t> spot_ice_ring;
|
|
std::vector<int32_t> spot_h;
|
|
std::vector<int32_t> spot_k;
|
|
std::vector<int32_t> spot_l;
|
|
std::vector<float> spot_dist_ewald;
|
|
|
|
AutoIncrVector<float> beam_corr_x{NAN};
|
|
AutoIncrVector<float> beam_corr_y{NAN};
|
|
|
|
AutoIncrVector<uint32_t> npeaks;
|
|
AutoIncrVector<uint32_t> strong_pixel_count;
|
|
|
|
AutoIncrVector<uint32_t> spot_count_total;
|
|
AutoIncrVector<uint32_t> spot_count_ice;
|
|
AutoIncrVector<uint32_t> spot_count_indexed;
|
|
AutoIncrVector<uint32_t> spot_count_low_res;
|
|
|
|
// indexing
|
|
AutoIncrVector<uint8_t> indexed;
|
|
std::vector<float> indexed_lattice;
|
|
|
|
// crystal
|
|
AutoIncrVector<float> profile_radius{NAN};
|
|
AutoIncrVector<float> mosaicity_deg{NAN};
|
|
AutoIncrVector<float> b_factor{NAN};
|
|
|
|
// bkg_estimate
|
|
AutoIncrVector<float> bkg_estimate{NAN};
|
|
|
|
// resolution_estimation
|
|
AutoIncrVector<float> resolution_estimate{NAN};
|
|
|
|
AutoIncrVector<uint32_t> niggli_class;
|
|
AutoIncrVector<std::string> bravais_lattice;
|
|
|
|
AutoIncrVector<int64_t> integrated_reflections;
|
|
|
|
|
|
// scaling
|
|
bool image_scale_present = false;
|
|
AutoIncrVector<float> image_scale_factor{NAN};
|
|
AutoIncrVector<float> image_scale_cc{NAN};
|
|
AutoIncrVector<float> image_scale_mosaicity{NAN};
|
|
AutoIncrVector<float> image_scale_b_factor{NAN};
|
|
public:
|
|
explicit HDF5DataFilePluginMX(const StartMessage& msg);
|
|
void OpenFile(HDF5File &data_file, const DataMessage& msg, size_t images_per_file) override;
|
|
void Write(const DataMessage& msg, uint64_t image_number) override;
|
|
void WriteFinal(HDF5File &data_file) override;
|
|
};
|