leonarski_f
fc68a9baed
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This is an UNSTABLE release. The release has significant modifications for data processing - in case of troubles go back to 1.0.0-rc.144. jfjoch_process: Generate a dedicated file (_process.h5), which can be used as a replacement for the _master.h5 file for a reanalyzed dataset. jfjoch_process: Improve the performance of scaling and merging, implement on the fly scaling. jfjoch_writer: All final data analysis results are repopulated in the _master.h5 file. jfjoch_scale: Dedicated tool for rescaling/merging existing data. jfjoch_viewer: Fix bugs where pixel labels where displayed on a wrong pixel. WARNING! Scaling and merging are experimental at the moment, and may not provide reasonable results for the time being. Reviewed-on: #56
58 lines
2.6 KiB
C++
58 lines
2.6 KiB
C++
// SPDX-FileCopyrightText: 2024 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
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// SPDX-License-Identifier: GPL-3.0-only
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#include "HDF5DataFilePluginDetector.h"
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HDF5DataFilePluginDetector::HDF5DataFilePluginDetector(const StartMessage &msg) {
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integrated_format = (msg.file_format == FileWriterFormat::NXmxIntegrated);
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}
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void HDF5DataFilePluginDetector::OpenFile(HDF5File &in_data_file, const DataMessage &msg, size_t images_per_file) {
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jf_info.reserve(images_per_file);
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storage_cell.reserve(images_per_file);
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receiver_aq_dev_delay.reserve(images_per_file);
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receiver_free_buffers.reserve(images_per_file);
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efficiency.reserve(images_per_file);
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packets_received.reserve(images_per_file);
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packets_expected.reserve(images_per_file);
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}
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void HDF5DataFilePluginDetector::Write(const DataMessage &msg, uint64_t image_number) {
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if (msg.jf_info.has_value())
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jf_info[image_number] = msg.jf_info.value();
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if (msg.storage_cell.has_value())
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storage_cell[image_number] = msg.storage_cell.value();
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if (msg.receiver_aq_dev_delay.has_value())
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receiver_aq_dev_delay[image_number] = msg.receiver_aq_dev_delay.value();
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if (msg.receiver_buf_available.has_value())
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receiver_free_buffers[image_number] = msg.receiver_buf_available.value();
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if (msg.packets_received.has_value())
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packets_received[image_number] = msg.packets_received.value();
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if (msg.packets_expected.has_value())
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packets_expected[image_number] = msg.packets_expected.value();
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if (msg.image_collection_efficiency.has_value())
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efficiency[image_number] = msg.image_collection_efficiency.value();
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else
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efficiency[image_number] = 1.0;
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}
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void HDF5DataFilePluginDetector::WriteFinal(HDF5File &data_file) {
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const std::string prefix = integrated_format ? "/entry/instrument/detector/detectorSpecific" : "/entry/detector";
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if (!jf_info.empty())
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data_file.SaveVector(prefix + "/det_info", jf_info.vec());
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if (!storage_cell.empty())
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data_file.SaveVector(prefix + "/storage_cell_image", storage_cell.vec());
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if (!receiver_aq_dev_delay.empty())
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data_file.SaveVector(prefix + "/rcv_delay", receiver_aq_dev_delay.vec());
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if (!receiver_free_buffers.empty())
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data_file.SaveVector(prefix + "/rcv_free_send_buffers", receiver_free_buffers.vec());
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if (!packets_received.empty())
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data_file.SaveVector(prefix + "/packets_received", packets_received.vec());
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if (!packets_expected.empty())
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data_file.SaveVector(prefix + "/packets_expected", packets_expected.vec());
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data_file.SaveVector(prefix + "/data_collection_efficiency_image", efficiency.vec());
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}
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