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leonarski_fandClaude Opus 5 1df9556ec1 Bragg integration: default the radial background correction off again 
Auto rode in with the ice work rather than on its own evidence, and measured over
the 37-crystal rotation battery it does not carry itself yet. It TARGETS
correctly - it fires on ten crystals and every one is ice-positive, no failures,
no space-group changes - but it costs 1.35x the wall clock (median +3 s per
crystal, worst +29 s) and on the merge statistics it is the familiar sign-mixed
trade: high-shell CC1/2 worse on three of the four crystals that move materially,
mean -0.76.

The case for it is real but rests on agreement with a fixed external model - 43 %
of the ice bands' excess amplitude removed on smooth ice, the effect 7x stronger
inside the bands than outside - which is the better arbiter and also the narrower
one. That deserves settling on its own, not riding along with a set of ice
defaults. `--background-radial=auto` keeps it a flag away.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
2026-08-07 00:29:42 +02:00
..
ADUHistogram.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ADUHistogram.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
AutoIncrVector.h
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
AzimuthalIntegrationMapping.cpp
Azimuthal integration: report the dimensions of the image the mapping covers
2026-07-29 09:31:58 +02:00
AzimuthalIntegrationMapping.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
AzimuthalIntegrationProfile.cpp
Ice: detect it on two channels, and only handle it when it is there
2026-08-06 16:17:23 +02:00
AzimuthalIntegrationProfile.h
Ice: detect it on two channels, and only handle it when it is there
2026-08-06 16:17:23 +02:00
AzimuthalIntegrationSettings.cpp
Azimuthal integration: optional sigma clipping of the reported profile
2026-08-07 00:18:52 +02:00
AzimuthalIntegrationSettings.h
Azimuthal integration: optional sigma clipping of the reported profile
2026-08-07 00:18:52 +02:00
BraggIntegrationSettings.cpp
Ice: default the merge mask off, gate the radial background on smooth ice, and pick detection by geometry
2026-08-06 19:06:30 +02:00
BraggIntegrationSettings.h
Bragg integration: default the radial background correction off again
2026-08-07 00:29:42 +02:00
BrokerStatus.h
v1.0.0-rc.129 (#36)
2026-03-05 22:13:12 +01:00
CheckPath.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
CMakeLists.txt
build: take the project version from the VERSION file, and read it once
2026-08-03 20:52:09 +02:00
ColorScale.cpp
v1.0.0-rc.124 (#31)
2026-02-01 13:29:33 +01:00
ColorScale.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
CompressedImage.cpp
v1.0.0-rc.40
2025-05-28 18:49:27 +02:00
CompressedImage.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
Coord.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
Coord.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
CorrelationCoefficient.cpp
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
CorrelationCoefficient.h
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
CrystalLattice.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
CrystalLattice.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
CUDAWrapper.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
CUDAWrapper.cu
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
CUDAWrapper.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
DarkMaskSettings.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
DarkMaskSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DatasetSettings.cpp
v1.0.0-rc.158 (#68)
2026-07-12 19:42:29 +02:00
DatasetSettings.h
v1.0.0-rc.158 (#68)
2026-07-12 19:42:29 +02:00
Definitions.h
Azimuthal integration: optional sigma clipping of the reported profile
2026-08-07 00:18:52 +02:00
DetectorGeometry.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorGeometryFixed.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
DetectorGeometryFixed.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorGeometryModular.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
DetectorGeometryModular.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorModuleGeometry.cpp
v1.0.0-rc.103 (#8)
2025-11-19 09:40:50 +01:00
DetectorModuleGeometry.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorSettings.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
DetectorSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorSetup.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
DetectorSetup.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
DiffractionExperiment.cpp
Keep the online reflection cap where the transport can carry it
2026-07-30 22:49:16 +02:00
DiffractionExperiment.h
Address code-review findings; make detection limits detector-driven
2026-07-27 09:07:00 +02:00
DiffractionGeometry.cpp
v1.0.0-rc.158 (#68)
2026-07-12 19:42:29 +02:00
DiffractionGeometry.h
v1.0.0-rc.158 (#68)
2026-07-12 19:42:29 +02:00
DiffractionSpot.cpp
spot_finding: accumulate spot centroids in integers
2026-08-02 19:03:35 +02:00
DiffractionSpot.h
spot_finding: accumulate spot centroids in integers
2026-08-02 19:03:35 +02:00
FileWriterSettings.cpp
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
FileWriterSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
GitInfo.cpp.in
build: take the project version from the VERSION file, and read it once
2026-08-03 20:52:09 +02:00
GitInfo.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
GoniometerAxis.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
GoniometerAxis.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
GridScanSettings.cpp
v1.0.0-rc.104 (#9)
2025-11-19 17:28:10 +01:00
GridScanSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
Histogram.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
hkl_key.h
v1.0.0-rc.124 (#31)
2026-02-01 13:29:33 +01:00
ImageBuffer.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ImageBuffer.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ImageFormatSettings.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
ImageFormatSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
IndexingSettings.cpp
rugnux: clamp the refinement thread count to what the setting accepts
2026-08-03 14:14:09 +02:00
IndexingSettings.h
rugnux: clamp the refinement thread count to what the setting accepts
2026-08-03 14:14:09 +02:00
InstrumentMetadata.cpp
version 1.0.0-rc.27
2024-12-02 21:17:14 +01:00
InstrumentMetadata.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
JFJochException.h
v1.0.0-rc.157 (#67)
2026-07-11 07:19:11 +02:00
JFJochMath.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
JFJochMessages.h
Ice: detect it on two channels, and only handle it when it is there
2026-08-06 16:17:23 +02:00
JFJochReceiverPlots.cpp
Ice: detect it on two channels, and only handle it when it is there
2026-08-06 16:17:23 +02:00
JFJochReceiverPlots.h
Ice: detect it on two channels, and only handle it when it is there
2026-08-06 16:17:23 +02:00
JfjochTCP.h
v1.0.0-rc.158 (#68)
2026-07-12 19:42:29 +02:00
Logger.cpp
v1.0.0-rc.82
2025-09-22 19:49:39 +02:00
Logger.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ModuleSummation.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
ModuleSummation.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
MovingAverage.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
MovingAverage.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
MultiLinePlot.cpp
v1.0.0-rc.40
2025-05-28 18:49:27 +02:00
MultiLinePlot.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
NetworkAddressConvert.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
NetworkAddressConvert.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
PixelMask.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
PixelMask.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
Plot.h
Address code-review findings; make detection limits detector-driven
2026-07-27 09:07:00 +02:00
print_license.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
RawToConvertedGeometry.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
RawToConvertedGeometryCore.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
Reflection.h
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
ResolutionShells.cpp
Merge statistics: count the observations the merge kept, not the ones it walked
2026-08-06 19:06:00 +02:00
ResolutionShells.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ROIAzimuthal.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIAzimuthal.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIBox.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIBox.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROICircle.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROICircle.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIDefinition.cpp
version 1.0.0-rc.29
2024-12-08 13:26:13 +01:00
ROIDefinition.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ROIElement.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIElement.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIMap.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIMap.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ScalingSettings.cpp
Azimuthal integration: optional sigma clipping of the reported profile
2026-08-07 00:18:52 +02:00
ScalingSettings.h
Azimuthal integration: optional sigma clipping of the reported profile
2026-08-07 00:18:52 +02:00
ScanResult.cpp
v1.0.0-rc.44
2025-06-15 17:46:46 +02:00
ScanResult.h
Ice: detect it on two channels, and only handle it when it is there
2026-08-06 16:17:23 +02:00
ScanResultGenerator.cpp
Ice: detect it on two channels, and only handle it when it is there
2026-08-06 16:17:23 +02:00
ScanResultGenerator.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
SpotToSave.cpp
v1.0.0-rc.72
2025-09-08 20:28:59 +02:00
SpotToSave.h
Remove --soft-weight and --local-snr spot-finder options
2026-07-25 17:31:35 +02:00
StatusVector.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
StatusVector.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ThreadSafeFIFO.h
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
time_utc.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
TopPixels.cpp
v1.0.0-rc.121 (#28)
2025-12-12 21:24:20 +01:00
TopPixels.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
UnitCell.cpp
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
UnitCell.h
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
XrayFluorescenceSpectrum.cpp
v1.0.0-rc.81
2025-09-21 19:27:51 +02:00
XrayFluorescenceSpectrum.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ZeroCopyReturnValue.cpp
common: reset the slot status before putting it back on the free list
2026-07-31 14:41:13 +02:00
ZeroCopyReturnValue.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ZMQWrappers.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
ZMQWrappers.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00