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Jungfraujoch/broker/gen/model/Geom_refinement_algorithm.cpp
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leonarski_fandFilip Leonarski 19b135186d
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v1.0.0-rc.175 (#85)
* Rugnux: Processes a collection live while jfjoch_broker writes it (`rugnux <master.h5> <broker URL>`).
* Rugnux: Processing starts on the first images and confirms its choices once all are in, so analysis can begin during collection.
* Rugnux: Faster processing, especially on servers with several GPUs and CPU sockets and on computers without a GPU (`--no-gpu`, macOS).
* Rugnux: Uses much less GPU memory, so large data sets stay on the GPU of smaller cards, and a data set too large for the card is processed on the CPU instead.
* Rugnux: On macOS, Bragg integration runs on the Apple GPU.
* Rugnux: Better handling of twinning and pseudo-symmetry, with the twin hypothesis written as `<prefix>_twin_<SG>.mtz`, and a wrong `--model` no longer confirms the data or decides the hand.
* Rugnux: `--model` accepts predicted (AlphaFold) models and falls back to molecular replacement when the model is not placed as a rigid body (experimental `--mr` forces it), settling space group, hand and twinning and writing a different answer as `<prefix>_mr.mtz`.
* Rugnux: Molecular replacement is faster and settles the space group in more cases with several copies in the asymmetric unit.
* Rugnux: Deposition-ready mmCIF, a richer report, and numbered steps on the terminal with the full log in `<prefix>_log.txt`; `_P1.mtz`, `--estimate-beam-center` and `--beam-center-search` are removed.
* Rugnux: The beam-stop shadow is found correctly on tilted detectors.
* Rugnux: Stills files that record a stationary goniometer axis get the default stills geometry refinement.
* jfjoch_viewer: "Analyze dataset" uses the same defaults as a bare `rugnux <file>`, and shows the results of processed CBF, marCCD and SMV sweeps.
* jfjoch_viewer: The Files panel refreshes on F5 and every few seconds, and the plot type and other selections stay put during live collection.
* jfjoch_writer: Memory stays bounded and old data files are closed efficiently on long runs, any failure ends the run in an error state the broker is told about, and the master file appears only after its data files; the ZeroMQ pusher logs when a stalled writer makes it drop images.
* Fixes: The TCP image pusher no longer blocks the broker's receiver, GPU out-of-memory failures stop with a clear message, and the XDS plugin masks module and chip edges.

---------

Co-authored-by: Filip Leonarski <jungfrau@filips-mac-mini.home>
Reviewed-on: #85
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
2026-10-16 15:34:43 +02:00

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4.6 KiB
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/**
* Jungfraujoch
* API to control Jungfraujoch developed by the Paul Scherrer Institute (Switzerland). Jungfraujoch is a data acquisition and analysis system for pixel array detectors, primarly PSI JUNGFRAU. Jungfraujoch uses FPGA boards to acquire data at high data rates. # License Clarification While this API definition is licensed under GPL-3.0, **the GPL copyleft provisions do not apply** when this file is used solely to generate OpenAPI clients or when implementing applications that interact with the API. Generated client code and applications using this API definition are not subject to the GPL license requirements and may be distributed under terms of your choosing. This exception is similar in spirit to the Linux Kernel's approach to userspace API headers and the GCC Runtime Library Exception. The Linux Kernel developers have explicitly stated that user programs that merely use the kernel interfaces (syscalls, ioctl definitions, etc.) are not derivative works of the kernel and are not subject to the terms of the GPL. This exception is intended to allow wider use of this API specification without imposing GPL requirements on applications that merely interact with the API, regardless of whether they communicate through network calls or other mechanisms.
*
* The version of the OpenAPI document: 1.0.0-rc.175
* Contact: filip.leonarski@psi.ch
*
* NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
* https://openapi-generator.tech
* Do not edit the class manually.
*/
#include "Geom_refinement_algorithm.h"
#include "Helpers.h"
#include <stdexcept>
#include <sstream>
namespace org::openapitools::server::model
{
Geom_refinement_algorithm::Geom_refinement_algorithm()
{
}
void Geom_refinement_algorithm::validate() const
{
std::stringstream msg;
if (!validate(msg))
{
throw org::openapitools::server::helpers::ValidationException(msg.str());
}
}
bool Geom_refinement_algorithm::validate(std::stringstream& msg) const
{
return validate(msg, "");
}
bool Geom_refinement_algorithm::validate(std::stringstream& msg, const std::string& pathPrefix) const
{
bool success = true;
const std::string _pathPrefix = pathPrefix.empty() ? "Geom_refinement_algorithm" : pathPrefix;
if (m_value == Geom_refinement_algorithm::eGeom_refinement_algorithm::INVALID_VALUE_OPENAPI_GENERATED)
{
success = false;
msg << _pathPrefix << ": has no value;";
}
return success;
}
bool Geom_refinement_algorithm::operator==(const Geom_refinement_algorithm& rhs) const
{
return
getValue() == rhs.getValue()
;
}
bool Geom_refinement_algorithm::operator!=(const Geom_refinement_algorithm& rhs) const
{
return !(*this == rhs);
}
void to_json(nlohmann::json& j, const Geom_refinement_algorithm& o)
{
j = nlohmann::json::object();
switch (o.getValue())
{
case Geom_refinement_algorithm::eGeom_refinement_algorithm::INVALID_VALUE_OPENAPI_GENERATED:
j = "INVALID_VALUE_OPENAPI_GENERATED";
break;
case Geom_refinement_algorithm::eGeom_refinement_algorithm::BEAMCENTER:
j = "BeamCenter";
break;
case Geom_refinement_algorithm::eGeom_refinement_algorithm::ORIENTATIONONLY:
j = "OrientationOnly";
break;
case Geom_refinement_algorithm::eGeom_refinement_algorithm::FLEX:
j = "Flex";
break;
case Geom_refinement_algorithm::eGeom_refinement_algorithm::NONE:
j = "None";
break;
}
}
void from_json(const nlohmann::json& j, Geom_refinement_algorithm& o)
{
auto s = j.get<std::string>();
if (s == "BeamCenter") {
o.setValue(Geom_refinement_algorithm::eGeom_refinement_algorithm::BEAMCENTER);
}
else if (s == "OrientationOnly") {
o.setValue(Geom_refinement_algorithm::eGeom_refinement_algorithm::ORIENTATIONONLY);
}
else if (s == "Flex") {
o.setValue(Geom_refinement_algorithm::eGeom_refinement_algorithm::FLEX);
}
else if (s == "None") {
o.setValue(Geom_refinement_algorithm::eGeom_refinement_algorithm::NONE);
} else {
std::stringstream ss;
ss << "Unexpected value " << s << " in json"
<< " cannot be converted to enum of type"
<< " Geom_refinement_algorithm::eGeom_refinement_algorithm";
throw std::invalid_argument(ss.str());
}
}
Geom_refinement_algorithm::eGeom_refinement_algorithm Geom_refinement_algorithm::getValue() const
{
return m_value;
}
void Geom_refinement_algorithm::setValue(Geom_refinement_algorithm::eGeom_refinement_algorithm value)
{
m_value = value;
}
} // namespace org::openapitools::server::model