leonarski_f
afbe844b20
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* Rugnux: Processes serial crystallography data from XFELs - SACLA (MPCCD), PAL-XFEL and European XFEL (CXI), LCLS (XTC) and SwissFEL Alvra (JUNGFRAU with a CrystFEL module geometry) - with several files or Jungfraujoch master files merged in one run (`rugnux *_master.h5`). * Rugnux: Stills processing takes a known unit cell and space group as a starting point, finds the beam centre (and, with a cell, the detector distance) from the images, detects the saturation level in other facilities' files and refines the placement of individual detector panels. * Rugnux: The stills report gives R_split and CC1/2 from frame half-sets, comparable with CrystFEL. * jfjoch_viewer: Opens the same XFEL file formats. * Validation: A stills battery checks Rugnux against deposited structures from SACLA, PAL-XFEL, LCLS, European XFEL and SwissFEL. * Rugnux: More reliable convergence of rotation scaling, and live molecular replacement starts as soon as the model is uploaded. * jfjoch_broker: Initialize clears the previous dataset's bearer tokens, image buffer and live Rugnux status, and a slow CUDA JIT cache is reported at start. Reviewed-on: #88 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
18 lines
821 B
JSON
18 lines
821 B
JSON
{
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"_comment": "Copy to site.json beside battery.py (not committed), or anywhere and point JFJOCH_BATTERY_SITE at it. Paths are absolute; a relative manifest resolves against tools/battery/.",
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"runs_root": "/path/to/battery/runs",
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"lock_file": "/path/to/battery/full_run.lock",
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"gpulock": null,
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"baseline": null,
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"baseline_private": null,
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"baseline_timing": null,
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"pdb_cache": "/path/to/battery/pdb_cache",
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"cod_cache": "/path/to/battery/cod_cache",
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"shelxl": null,
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"still": {"manifest": "still_manifest.json", "data_root": "/path/to/battery/still", "private_manifest": null},
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"arms": {
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"open": {"manifest": "open.json", "reference": "deposition", "data_root": "/path/to/battery/open"},
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"inhouse": {"manifest": "inhouse.json", "reference": "xds", "data_root": "/path/to/battery/inhouse"}
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}
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}
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