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* Rugnux: Processes serial crystallography data from XFELs - SACLA (MPCCD), PAL-XFEL and European XFEL (CXI), LCLS (XTC) and SwissFEL Alvra (JUNGFRAU with a CrystFEL module geometry) - with several files or Jungfraujoch master files merged in one run (`rugnux *_master.h5`). * Rugnux: Stills processing takes a known unit cell and space group as a starting point, finds the beam centre (and, with a cell, the detector distance) from the images, detects the saturation level in other facilities' files and refines the placement of individual detector panels. * Rugnux: The stills report gives R_split and CC1/2 from frame half-sets, comparable with CrystFEL. * jfjoch_viewer: Opens the same XFEL file formats. * Validation: A stills battery checks Rugnux against deposited structures from SACLA, PAL-XFEL, LCLS, European XFEL and SwissFEL. * Rugnux: More reliable convergence of rotation scaling, and live molecular replacement starts as soon as the model is uploaded. * jfjoch_broker: Initialize clears the previous dataset's bearer tokens, image buffer and live Rugnux status, and a slow CUDA JIT cache is reported at start. Reviewed-on: #88 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
158 lines
5.5 KiB
C++
158 lines
5.5 KiB
C++
// SPDX-FileCopyrightText: 2024 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
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// SPDX-License-Identifier: GPL-3.0-only
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// Using OpenAPI licensed with Apache License 2.0
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#include <csignal>
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#include <fstream>
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#include <iostream>
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#include <vector>
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#include <nlohmann/json.hpp>
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#include "../common/CudaJitCache.h"
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#include "../common/GitInfo.h"
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#include "../common/Logger.h"
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#include "../common/print_license.h"
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#include "../detector_control/DectrisSimplonClient.h"
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#include "../image_analysis/indexing/IndexerThreadPool.h"
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#include "../writer/HDF5Objects.h"
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#include "JFJochBrokerHttp.h"
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#include "JFJochBrokerParser.h"
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static httplib::Server *httpServer = nullptr;
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static void sigHandler [[noreturn]] (int sig) {
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switch (sig) {
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case SIGINT:
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case SIGQUIT:
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case SIGTERM:
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case SIGHUP:
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default:
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if (httpServer)
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httpServer->stop();
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break;
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}
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std::exit(0);
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}
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static void setUpUnixSignals(std::vector<int> quitSignals) {
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sigset_t blocking_mask;
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sigemptyset(&blocking_mask);
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for (auto sig : quitSignals)
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sigaddset(&blocking_mask, sig);
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struct sigaction sa;
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sa.sa_handler = sigHandler;
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sa.sa_mask = blocking_mask;
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sa.sa_flags = 0;
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for (auto sig : quitSignals)
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sigaction(sig, &sa, nullptr);
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}
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int main(int argc, char **argv) {
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UsePrivateCudaJitCacheIfNeeded();
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RegisterHDF5Filter();
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print_license("jfjoch_broker");
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if ((argc == 1) || (argc > 3)) {
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std::cout << "Usage ./jfjoch_broker <JSON config> {<TCP http port>}" << std::endl;
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return EXIT_FAILURE;
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}
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uint16_t http_port = 5232;
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if (argc >= 3) http_port = static_cast<uint16_t>(std::atoi(argv[2]));
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Logger logger("jfjoch_broker");
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logger.Info("jfjoch_broker {} (git {}), built with {}", jfjoch_version(), jfjoch_git_sha1().substr(0, 6),
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jfjoch_build_info(true));
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// cuFFT's initialisation, and card 0's context, ahead of the first collection; the plan it times shows
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// whether the CUDA JIT cache works - without one, every plan the analysis makes is compiled again.
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LogCudaJitCache(logger, WarmUpCuFFT());
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org::openapitools::server::model::Jfjoch_settings settings;
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std::ifstream file(argv[1]);
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try {
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nlohmann::json input = nlohmann::json::parse(file);
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settings = input;
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settings.validate();
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logger.Info("JSON configuration file read properly");
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} catch (const std::exception &e) {
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logger.Error("Error reading JSON configuration file: " + std::string(e.what()));
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return EXIT_FAILURE;
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}
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if (settings.numaPolicyIsSet())
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logger.Warning("NUMA policy is deprecated and ignored - processed are split over all the CPUs/GPUs in the system");
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const bool verbose = settings.verboseIsSet() && settings.isVerbose();
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logger.Verbose(verbose);
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Logger::ServiceLevel("JFJochBroker", verbose ? spdlog::level::debug : spdlog::level::info);
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// What rugnux logs as it processes is its result, and that reaches the user through the live status,
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// the end message and the written files: the journal keeps its errors only, and all of it when verbose.
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for (const auto &service: {"Rugnux", "ScaleOnTheFly"})
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Logger::ServiceLevel(service, verbose ? spdlog::level::debug : spdlog::level::err);
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std::unique_ptr<ImagePusher> image_pusher = ParseImagePusher(settings);
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if (image_pusher)
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logger.Info(image_pusher->PrintSetup());
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std::vector<DetectorSetup> det_setup;
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for (const auto &d: settings.getDetector())
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det_setup.push_back(ParseDetectorSetup(d));
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if (det_setup.empty()) {
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logger.Error("At least one detector need to be defined in the config file");
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return EXIT_FAILURE;
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}
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DiffractionExperiment experiment(det_setup[0]);
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ParseFacilityConfiguration(settings, experiment);
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SpotFindingSettings spot_finding_settings = ParseSpotFindingSettings(settings);
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AcquisitionDeviceGroup aq_devices;
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ParseAcquisitionDeviceGroup(settings, aq_devices);
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experiment.DataStreams(aq_devices.size());
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int32_t send_buffer_size_MiB = settings.getImageBufferMiB();
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std::unique_ptr<JFJochReceiverService> receiver =
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std::make_unique<JFJochReceiverService>(aq_devices, logger, *image_pusher, send_buffer_size_MiB);
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ParseReceiverSettings(settings, *receiver);
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JFJochBrokerHttp broker(experiment, spot_finding_settings);
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broker.FrontendDirectory(settings.getFrontendDirectory());
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for (const auto &d: det_setup)
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broker.AddDetectorSetup(d);
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if (receiver)
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broker.Services().Receiver(receiver.get());
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ParseRugnuxSettings(settings, broker.Services());
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httplib::Server server;
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httpServer = &server;
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// Set here rather than through httplib's compile-time default: a reader following a collection
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// holds one thread for the whole run (/live/events), beside the web frontend's polling.
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server.new_task_queue = [] { return new httplib::ThreadPool(16, 64); };
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server.Get("/", [](const httplib::Request &req, httplib::Response &res) {
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res.status = 302; // Found (temporary redirect)
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res.set_header("Location", "/frontend");
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});
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server.set_mount_point("/frontend", settings.getFrontendDirectory());
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signal(SIGPIPE, SIG_IGN);
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std::vector<int> sigs{SIGQUIT, SIGINT, SIGTERM, SIGHUP};
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setUpUnixSignals(sigs);
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broker.attach(server);
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if (!server.listen("0.0.0.0", http_port)) {
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logger.Error("Failed to start HTTP server");
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return EXIT_FAILURE;
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}
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return EXIT_SUCCESS;
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}
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