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* Fixed `jfjoch_broker` cancelling every data collection with a CUDA "out of memory" error after long operation: GPU memory no longer leaks with each collection. * Rugnux scales a rotation sweep until the per-frame scales settle instead of for a fixed three rounds, and says so when they did not - merged intensities, and the space group, resolution cut and frame rejection read off them, change accordingly; `--scaling-iterations` is now the cap on that loop (default 100). * Rugnux places every frame of a marCCD, SMV or miniCBF series at the spindle angle its own header states, so a series with missing frames, or with angles written modulo 360, is no longer read at the wrong geometry or refused. * Every rotation run writes two diagnostic files beside its reflections: `<prefix>_detector.jpg`, the detector projection with the pixel mask and the detected beam-stop shadow drawn on it, and `<prefix>_plot.txt`, one row per image. Reviewed-on: #82 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
62 lines
2.7 KiB
C++
62 lines
2.7 KiB
C++
// SPDX-FileCopyrightText: 2026 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
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// SPDX-License-Identifier: GPL-3.0-only
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#pragma once
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#include <string>
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#include <vector>
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#include "JFJochReader.h"
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#include "MiniCBF.h"
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// Reads a rotation sweep straight from a directory of PILATUS miniCBF files - the form most
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// facilities still archive - with no conversion step and no libcbf.
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//
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// The sweep's geometry comes from the first file's header; the rotation angle of each image comes
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// from its own header, which costs only the bytes up to the binary separator. Images are decoded on
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// demand, one per call, so any number of workers can read at once - there is no global lock as there
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// is on the HDF5 path, HDF5 not being thread-safe.
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//
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// A raw CBF carries no analysis results, so this reader has no spots, no reflections and no snapshots;
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// the dataset it builds is the geometry, the mask and nothing else, exactly as a plain DECTRIS file
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// with no /entry/MX would give.
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class JFJochCBFReader : public JFJochReader {
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std::vector<std::string> files_;
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std::shared_ptr<JFJochReaderDataset> dataset_;
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minicbf::Header header0_;
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bool LoadImage_i(std::shared_ptr<JFJochReaderDataset> &dataset,
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DataMessage &message,
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std::vector<uint8_t> &buffer,
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int64_t image_number,
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bool update_dataset) override;
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// Decodes one image into the caller's byte buffer (RawByteBuffer or std::vector<uint8_t>) and
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// returns the image that points at it. The compressed file is read through scratch, which the
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// caller keeps between frames.
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template <class Buffer>
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CompressedImage DecodeInto(int64_t image_number, Buffer &buffer, std::vector<uint8_t> &scratch) const;
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public:
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~JFJochCBFReader() override = default;
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// True if the path names something this reader can open: a miniCBF file, or a directory holding
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// at least one. Cheap - it reads a few kB at most.
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static bool CanRead(const std::string &path);
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// path is a directory of *.cbf, or one *.cbf inside the sweep to take the whole directory from.
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void ReadFiles(const std::string &path);
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[[nodiscard]] uint64_t GetNumberOfImages() const override;
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void Close() override;
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// Whether the sweep really has an image at this point. A deposited series can be missing frames,
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// and they are kept as gaps so that every image keeps the spindle angle its own header states;
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// ReadRawImage hands such a slot back as "nothing to read".
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[[nodiscard]] bool HasImage(int64_t image_number) const;
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bool ReadRawImage(int64_t image_number, JFJochReaderRawImage &image) override;
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[[nodiscard]] std::vector<SpotToSave> ReadSpots(int64_t image) const override;
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};
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