leonarski_fandClaude Opus 5.5
59332d4694
still_battery.py runs the public serial datasets of still_manifest.json with their deposition's cell and space group, refines the deposited model against each merge with dimple and the deposition's own free set, and reports per set: facility, beamline, detector, PDB, images, indexing rate, R_split, our R-free beside the deposition's published R-free, the wall time of the rugnux command, ms per image, the input's I/O floor (bytes over 5 GB/s) and how much of the input was already in the page cache. It shares battery.py's site config (a "still" section), verbs (run, compare, report, list, keep) and run-directory layout; run directories carry "still-" in their label. The datasets (CXIDB 243, 237, 236, 86, 90, 222, 242, 83, 152, 103, 213; dark and ground-state entries only) are listed with their verified DataCite DOIs in docs/EXTERNAL_TEST_DATA_STILLS.md, linked from EXTERNAL_TEST_DATA.md; CXIDB is credited in ACKNOWLEDGEMENT.md. The SwissFEL sets also run as int16 bitshuffle/LZ4 copies, made with still/float32_to_int16.py. The stray scripts in the repository root move under tools/battery: rugnux_stills_ab.py and its dataset template to still/, rugnux_anomalous.py beside battery.py; docs/TESTS.md follows. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_015CeEGgpKdfkCTJb3YNMJcu
1.7 KiB
PSI Jungfraujoch
Jungfraujoch is data acquisition and on-the-fly analysis system developed by the Paul Scherrer Institut.
It can be currently used with PSI and DECTRIS detectors.
Its data-processing half is rugnux — start at rugnux <RUGNUX> to
process a stored dataset, and at the broker <JFJOCH_BROKER> to acquire one.
Jungfraujoch is distributed under the GPLv3 license.
RUGNUX RUGNUX_OVERVIEW RUGNUX_INSTALL RUGNUX_FORMATS RUGNUX_TUTORIAL RUGNUX_INTEGRATION RUGNUX_REPORT RUGNUX_ADVANCED RUGNUX_MODEL_AND_REFERENCE RUGNUX_CALIBRATION RUGNUX_BENCHMARKING CPU_DATA_ANALYSIS CPU_DATA_ANALYSIS_IMAGE CPU_DATA_ANALYSIS_INDEXING CPU_DATA_ANALYSIS_INTEGRATION CPU_DATA_ANALYSIS_DECISIONS GPU_DATA_ANALYSIS
JFJOCH_BROKER JFJOCH_WRITER JFJOCH_VIEWER SOFTWARE_INTEGRATION TOOLS DEPLOYMENT DETECTORS HARDWARE SOFTWARE
FPGA FPGA_LICENSE FPGA_DESIGN FPGA_NETWORK FPGA_PCIE_DRIVER FPGA_SETTINGS FPGA_DATA_ANALYSIS
DETECTOR_GEOMETRY OPENAPI OPENAPI_SPECS PYTHON_CLIENT CBOR HDF5 IMAGE_STREAM PIXEL_MASK WEB_FRONTEND TESTS
ACKNOWLEDGEMENT EXTERNAL_TEST_DATA EXTERNAL_TEST_DATA_STILLS LICENSE THIRD_PARTY_NOTICES VERSIONING SECURITY RELEASE_CONTENTS REPOSITORIES NAMING CHANGELOG